KEGG   Variovorax paradoxus S110: Vapar_0498
Entry
Vapar_0498        CDS       T00916                                 
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
vap  Variovorax paradoxus S110
Pathway
vap03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:vap00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Vapar_0498
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vap03400]
    Vapar_0498
Enzymes [BR:vap01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Vapar_0498
DNA repair and recombination proteins [BR:vap03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Vapar_0498
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_primase_S
Other DBs
NCBI-ProteinID: ACS17161
UniProt: C5CJG1
Position
1:538471..539367
AA seq 298 aa
MATAQKAPRITHAERLIDAASGLTKGDLAAYYARVAPLMLPHLEGRPVALVRAPDGVGGE
LFFQKHAQHSDIAGIKLLDPALDPGHDPLLQIDTAEALVGAAQFNTVELHTWNATSRALG
KPDRMTFDLDPGEGIDWQQMQEAALLVRVLLDELGLPSFLKTSGGKGLHVVVPLRRQFGW
DEVRGFSRAIVEHLARTVPERFVAKSGPRNRVGRIFADYLRNGFGATTVSAWSARARPGM
GVSVPLAWEELPDLDSAAHWTVANIGPRLATGNTPWDAMERSRTGLRAAMQMLGFLPA
NT seq 897 nt   +upstreamnt  +downstreamnt
atggccacggcgcagaaggcgccgcgcatcacccacgcggagcgcctgatcgacgccgcc
agcggcctcaccaagggcgatctcgcggcctactacgcgcgcgtcgcgccgctgatgctg
ccgcacctcgaagggcggccggtggcgctggtgcgcgcgcccgacggcgtgggcggcgag
ctgttcttccagaagcatgcgcagcacagcgacatcgcgggcatcaagctgctcgatccc
gcgctcgacccgggccacgacccgctgctgcagatcgacaccgcagaggcgctggtcggc
gcggcgcagttcaacaccgtcgagctgcacacctggaacgccacctcgcgcgccctcggc
aagcccgaccgcatgaccttcgacctcgaccccggcgaaggcatcgactggcagcagatg
caggaggcggcgctgctggtgcgcgtgctgctcgacgagctcggcctgccgtcgttcctc
aagaccagcggcggcaaggggctgcacgtggtggtgccgctgcggcgccagttcggctgg
gacgaggtgcgcggcttctcgcgggccatcgtcgagcacctggcgcgcaccgtgcccgag
cgcttcgtggccaagagcgggccgcgcaaccgcgtgggccggatcttcgcggactacctt
cgcaacggcttcggcgccaccaccgtgagcgcatggtcggcgcgcgcgcggccgggcatg
ggcgtgtcggtgccgctcgcctgggaagagctgcccgacctggacagcgccgcccactgg
acggtggcgaacatcggcccgcgcctggccaccggcaacacgccctgggacgcgatggag
cgcagccgcaccggccttcgcgccgcgatgcagatgctcggcttcctgcccgcgtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (22)   

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