KEGG   Variovorax paradoxus S110: Vapar_2142
Entry
Vapar_2142        CDS       T00916                                 
Name
(GenBank) cysteine desulfurase IscS
  KO
K04487  cysteine desulfurase [EC:2.8.1.7]
Organism
vap  Variovorax paradoxus S110
Pathway
vap00730  Thiamine metabolism
vap01100  Metabolic pathways
vap01240  Biosynthesis of cofactors
vap04122  Sulfur relay system
Brite
KEGG Orthology (KO) [BR:vap00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00730 Thiamine metabolism
    Vapar_2142
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04122 Sulfur relay system
    Vapar_2142
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:vap03016]
    Vapar_2142
   03029 Mitochondrial biogenesis [BR:vap03029]
    Vapar_2142
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:vap02048]
    Vapar_2142
Enzymes [BR:vap01000]
 2. Transferases
  2.8  Transferring sulfur-containing groups
   2.8.1  Sulfurtransferases
    2.8.1.7  cysteine desulfurase
     Vapar_2142
Transfer RNA biogenesis [BR:vap03016]
 Eukaryotic type
  tRNA modification factors
   Thiolation factors
    Vapar_2142
 Prokaryotic type
    Vapar_2142
Mitochondrial biogenesis [BR:vap03029]
 Mitochondrial quality control factors
  Regulator of mitochondrial biogenesis
   Proteins involved in Fe-S cluster biogenesis
    Vapar_2142
Prokaryotic defense system [BR:vap02048]
 DNA phosphothiolation system
  Sulfur modification proteins
   Vapar_2142
SSDB
Motif
Pfam: Aminotran_5 DegT_DnrJ_EryC1 Beta_elim_lyase Cys_Met_Meta_PP Pyridoxal_deC
Other DBs
NCBI-ProteinID: ACS18777
UniProt: C5CXC1
Position
1:2288167..2289387
AA seq 406 aa
MDVTPHFPIYLDYGATTPVDPRVVDAMIPWLREHFGNPASRSHAWGWEAEEAVEKARGYV
AELIGADPREIVWTSGATESNNLALKGAAHFYKGKGKHLITVKTEHKAVLDTMRELERQG
FEVTYMDVEENGLLDLDKFKAAIRPDTILASVMYVNNEIGVIQDVVALGNACREKGVIFH
VDAAQATGKVEIDIAKLPIDLMSLASHKTYGPKGIGALYVRRKPRVRLEAQMHGGGHERG
MRSGTLPTHQIVGMGEAFRIAKLEMKEDIAKAARLQKRLLDGLKDVDQVFINGDLEQRVP
HNLNMSFNYVEGESLIMGIKGLAVSSGSACTSASLEPSYVLRALGRSDELAHSSLRMTIG
RFTTEEEIDYAISTIKHNVAKLRELSPLWEMFQDGVDISTIQWSAH
NT seq 1221 nt   +upstreamnt  +downstreamnt
atggacgtcactcctcatttcccgatctatctcgattacggcgccaccacgccggttgac
ccgcgcgtggtcgacgccatgatcccctggttgcgcgagcacttcggcaacccggcgtcg
cgcagccacgcctggggctgggaggctgaagaggcggtcgagaaggcgcgcggctacgtg
gccgaactgatcggagccgacccgcgcgagatcgtctggacctccggcgccaccgagtcg
aacaacctcgcgctcaagggcgcggcccatttctacaagggcaagggcaagcacctcatc
acggtgaagaccgagcacaaggccgtgctcgacaccatgcgcgaactcgagcgccagggc
ttcgaagtcacctacatggacgtcgaggaaaacggcctgctcgacctggacaagttcaag
gcggcgatccgccccgacaccatccttgcgagcgtgatgtacgtcaacaacgagatcggc
gtcatccaggacgtggtcgcgctcggcaacgcctgccgcgaaaaaggcgtgatcttccat
gtcgacgcggcccaggccaccggcaaggtcgagatcgacatcgccaagctgcccatcgac
ctgatgagcctggcttcgcacaagacctacggccccaagggcatcggcgcgctgtacgtg
cgccgcaagccccgcgtgcggctcgaggcacagatgcacggcggcggccacgagcgcggc
atgcgttcgggcacgctgcccacgcaccagatcgtgggcatgggcgaggccttccgcatc
gccaagctcgaaatgaaggaagacatcgccaaggcggcgcgcctgcagaagcgcctgctc
gacggcctgaaggacgtggaccaggtgttcatcaacggcgacctcgagcagcgtgtgccg
cacaacctgaacatgagcttcaactacgtggaaggcgagtcgctgatcatgggcatcaag
ggcttggcggtgtcgtcgggttcggcctgcacctcggccagcctcgaacccagctacgtg
ctgcgcgccctgggccgcagcgacgagctggcccacagcagcctgcgcatgaccatcggc
cgtttcacgaccgaggaagaaatcgactacgccatctcgaccatcaagcacaacgtcgcc
aagctgcgcgagctgagccccctgtgggagatgttccaggacggcgtcgacatcagcacg
atccagtggtcggcccactga

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (32)   

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