KEGG   Variovorax paradoxus S110: Vapar_4028
Entry
Vapar_4028        CDS       T00916                                 
Name
(GenBank) seryl-tRNA synthetase
  KO
K01875  seryl-tRNA synthetase [EC:6.1.1.11]
Organism
vap  Variovorax paradoxus S110
Pathway
vap00970  Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:vap00001]
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    Vapar_4028
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01007 Amino acid related enzymes [BR:vap01007]
    Vapar_4028
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:vap03016]
    Vapar_4028
Enzymes [BR:vap01000]
 6. Ligases
  6.1  Forming carbon-oxygen bonds
   6.1.1  Ligases forming aminoacyl-tRNA and related compounds
    6.1.1.11  serine---tRNA ligase
     Vapar_4028
Amino acid related enzymes [BR:vap01007]
 Aminoacyl-tRNA synthetase
  Class II (C/G)
   Vapar_4028
Transfer RNA biogenesis [BR:vap03016]
 Eukaryotic type
  Aminoacyl-tRNA synthetases (AARSs)
   Other AARSs
    Vapar_4028
 Prokaryotic type
    Vapar_4028
SSDB
Motif
Pfam: tRNA-synt_2b Seryl_tRNA_N CEP63 ZapB HAUS-augmin3 TMF_TATA_bd Phage_GP20 DUF16
Other DBs
NCBI-ProteinID: ACS20642
UniProt: C5CWN5
Position
1:complement(4272576..4273907)
AA seq 443 aa
MLDITLLRKDLASAVAGLEKRKKNQPYLDVSAFTALEAERKTLQTRTEEIQARRNALNKQ
IGPLKAKGEPVDALMAEVNALKAEQESQSARLDQIQPELQALLLAVPNLPHVSVPVGEDE
AGNVEMRRWSPQGGAGANAAPLPFAAKDHVDLGAPLGLDFEMGAKLAGSRFTVMKGPIAR
LHRALAQFMLDIQTEKHGYAECYVPYIVNAATLSGTGQLPKFEGDLFAAKKGGQEGEPAP
DHSALYLIPTSEVPLTNFVRDEVVAEAQLPIKLTAHTPCFRSEAGSAGRDTRGMIRQHQF
DKVEMVQIVHPEKSYDALEQMTGHAEAVLQALELPYRVVLLCTGDMGFGATKTYDLEVWL
PAQNTYREISSVSNCEAFQARRLQARFKNAQGKNELVHTLNGSGLAVGRTLVAVLENHQN
EDGSINVPAALRPYLGGLELLRG
NT seq 1332 nt   +upstreamnt  +downstreamnt
atgcttgacatcactctgctccgcaaagacctggcctccgctgtggccggcctcgaaaaa
cgcaagaagaaccagccctacctcgatgtgtcggcgttcaccgcgctcgaggccgagcgc
aagacgctgcaaacccgcaccgaggagatccaggcccggcgcaacgcgctgaacaagcag
atcggcccgctcaaggccaagggcgagccggtcgatgcgctgatggccgaggtcaatgcg
ctcaaggccgagcaggaatcgcagtccgcgcggctcgaccagatccagcccgaactgcag
gcgctgctgctggccgtgcccaacctgccgcacgtcagcgtgccggtcggcgaggacgaa
gccggcaacgtcgagatgcgccgctggagcccgcagggcggtgccggcgccaatgccgcg
ccgctgcccttcgcggccaaggaccacgtcgacctgggcgcgcccctggggctcgacttc
gagatgggcgccaagctcgcgggctcgcgcttcaccgtcatgaaggggccgatcgcccgg
ctgcaccgcgcgctcgcgcagttcatgctcgacatccagaccgagaagcacggctatgcc
gagtgctacgtgccctacatcgtcaacgccgccaccctcagcggcaccggccagctgccc
aagttcgaaggcgacctgttcgctgccaagaagggcggccaggagggcgagcccgcgccc
gaccattcggcgctctacctcattccgaccagcgaagtgccgctcaccaacttcgtgcgc
gacgaggtggtggccgaggcccaattgccgatcaagctcacggcccacacgccgtgcttt
cgctccgaagccggcagcgccgggcgcgacacgcgcggcatgatccgccagcaccagttc
gacaaggtcgagatggtgcagatcgtccaccccgaaaagagctacgacgcgctcgagcag
atgaccggccacgccgaggccgtgctgcaggcgctcgaactgccgtaccgcgtggtgctg
ctgtgcaccggcgacatgggctttggcgccaccaagacctacgacctggaggtgtggctg
ccggcgcagaacacctaccgcgagatcagctcggtgtcgaactgcgaagccttccaggcg
cgccgcctgcaggcccgtttcaagaacgcgcagggcaagaacgaactcgtccacaccctc
aacggctcgggcctggcggtgggccgcacattggtcgcggtgctggaaaaccaccagaac
gaggacggctcgatcaacgtgcccgcggcgctgcggccctacctcggcggactggaactg
ttgcgcggctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (39)   

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