KEGG   Vibrio aquimaris: FIV01_12980
Entry
FIV01_12980       CDS       T06969                                 
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
vaq  Vibrio aquimaris
Pathway
vaq02020  Two-component system
vaq02040  Flagellar assembly
vaq05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vaq00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    FIV01_12980 (rpoN)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    FIV01_12980 (rpoN)
  09142 Cell motility
   02040 Flagellar assembly
    FIV01_12980 (rpoN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vaq03021]
    FIV01_12980 (rpoN)
Transcription machinery [BR:vaq03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     FIV01_12980 (rpoN)
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_21 TetR_C_5-like
Other DBs
NCBI-ProteinID: QFT27332
UniProt: A0A5P9CNX0
Position
2788354..2789814
AA seq 486 aa
MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLELEENSEDNTNLE
DKSAREEKESSSEATEPEVKDSSELIETSEISKELEIDTTWEDVYSANTGSTGLALDDDT
PVYQGETTQSLHDYLTWQLDLTPFSDTDRTIAMAIIDAIDDYGYLTISTQDILESFNHEE
IELDEIEAVRKRIQQFDPLGVASNNLQDCLLLQLAAFPEDTPWLKEAQLVLTEHIDQLGN
RDYKLIIREAKLKESDLKEALNLIQQLDPRPGSRIAAEHAEYVIPDVSVFKEHGKWRVTI
NPDSIPRLKVNQHYAALGKGNSSDSQYIRSNLQEAKWLIKSLESRNETLLKVAKCIVEHQ
RDFFEYGEEAMKPMVLNDVALDVDMHESTISRVTTQKFMHTPRGIFELKYFFSSHVSTDN
GGECSSTAIRALIKKLVAAENSAKPLSDSKIAALLADQGIQVARRTIAKYRESLGIAPSS
QRKRLL
NT seq 1461 nt   +upstreamnt  +downstreamnt
atgaaaccctcattacaactcaagctaggacaacagttagcaatgaccccacagttgcaa
caagccattcgcttgctgcaactctctactctggatctccagcaagagattcaagaagcc
ttggactccaacccactgttagaattagaagagaactcagaagacaatacaaacctcgaa
gacaagtcagcgagggaagaaaaagaaagtagctctgaagccacagaaccagaggtgaaa
gacagttcagaacttatcgaaacttcggaaataagtaaagaactcgaaattgatacaaca
tgggaagatgtgtacagcgcgaatacaggcagtactggcttagctttagatgatgacact
cccgtataccaaggtgaaaccactcaatcgctgcatgattaccttacttggcagttggat
ttaaccccatttagtgacacggacagaaccatagctatggcgataattgacgccatagac
gactatggctacctcaccatatcaacccaagatattctagagagctttaaccatgaagaa
attgagcttgatgaaattgaagccgtccgcaagcgtattcaacagtttgaccctctaggc
gttgcatcaaataatttgcaagattgcctactacttcagcttgccgctttccccgaggat
acaccttggctaaaagaagctcaattagtgctgactgagcatatagatcagctaggcaat
cgcgattataagctgattataagagaggctaagctaaaagagtccgatcttaaagaagcc
ttaaatttaattcaacaattggacccaagacctggcagccgtattgcagcggaacacgct
gaatatgtcattccagatgtatctgtatttaaagagcatggtaaatggcgggtaaccata
aaccctgactctatacccagactgaaagtcaaccaacactatgcagctttaggaaagggg
aacagctccgatagccaatatattcgctccaacctacaagaagcaaaatggctgataaaa
agtctagaaagtagaaatgaaactttgttaaaagttgcaaaatgtattgttgaacatcag
cgtgatttctttgaatatggggaagaagcaatgaaacccatggtactcaatgatgtcgct
ctggatgttgatatgcacgaatcgacaatttcaagggtaacgacccagaagttcatgcac
actccgagaggtatttttgaattaaaatatttcttttctagccatgtcagtaccgacaat
ggtggagagtgttcatccactgcaatccgagctttgatcaaaaagttggttgctgccgaa
aatagtgccaaaccactcagtgacagtaagattgcagctctacttgctgaccaagggatt
caggtcgctagacgaactatagcgaaataccgagaatctctaggcatcgccccttcgagt
cagcgcaaacgcctactttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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