KEGG   Vibrio astriarenae: GT360_11485
Entry
GT360_11485       CDS       T06574                                 
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
  KO
K20919  sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
vas  Vibrio astriarenae
Pathway
vas05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vas00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    GT360_11485
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:vas03000]
    GT360_11485
Transcription factors [BR:vas03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    GT360_11485
SSDB
Motif
Pfam: VpsR Sigma54_activat Sigma54_activ_2 HTH_8 HTH_29 AAA_16 AAA_2 HTH_7 HTH_17 HTH_50 AAA_22 HTH_22 HTH_Tnp_1_2 HTH_IclR HTH_23 AAA_5 DUF134 AAA HTH_30 HTH_28 RWP-RK LZ_Tnp_IS481 LacI TrbC_Ftype
Other DBs
NCBI-ProteinID: QIA64095
UniProt: A0A7Z2T4G0
Position
1:complement(2452141..2453472)
AA seq 443 aa
MGSHFRQDSTPGSLIVVGGTPEPWLKVLESAGWSCTISGDLRKADILFNETGPCIGIVDL
SHDEFSLNGIASLVSQHKHVRWMALIRESQLKSDTICQFIVNFCIDFFTSPIPDTQLLST
IGHQLGMLKLETKVWPHFGSNSDMGLVGESMPMKRLRDQVKRIGPTDVSILIYGESGSGK
EKVARAIHKTSSRSQREFISVNCRALSEQSLESELFGIGIEAGTRSMLERADGGTILLND
ILTLPKSQQLNLLRFLQEGTVETSEGLKKVDVRILAANSMDIEKALIDGDFNEDLYHYIN
VLRINVPSLKERSGDIALLARHFLQVYAKDYNAQARSFSEDAIKSLARYHWPGNVRELMN
LIKRVVLMSEQPIIEESQLEMPKRNNGKQSLKSIRERSERDALMLVLESHDGQVSQAAKE
LGVSRATMYRLLNKHNLISENSM
NT seq 1332 nt   +upstreamnt  +downstreamnt
atgggctctcattttagacaggattctacccctggctcattgattgtagtcggcgggacg
cctgagccttggttgaaggtattagaaagcgccggatggagctgtactattagtggtgac
cttcgcaaagcggatatattatttaacgagacagggccgtgtatcggtattgttgattta
agccatgatgaattttccctcaatggtattgcgagcttagtaagccaacataaacacgtg
cggtggatggcactgattcgagagtctcaacttaaatctgatacgatttgccagtttatc
gttaacttctgtattgatttcttcacctcacctattcctgatacgcagcttcttagtact
atcggtcaccaacttggcatgcttaaacttgagacgaaagtctggccacactttggcagc
aatagtgatatggggctggtgggtgagtccatgccaatgaagcgtttacgcgatcaggta
aaacgtattggtcccaccgatgtgagtatcttgatctatggtgagagtggctcaggaaaa
gaaaaggttgcaagagcgatccacaaaacatcatcccgctcgcagcgcgaatttatttca
gtcaactgtcgcgcactttcagagcaaagcttagagagtgaactgtttggtataggcatt
gaagctgggactcggtcaatgctggagcgcgcagatggtggcacgattctgcttaatgat
atcctcacgttgcctaagtctcagcagctcaacttattacgtttcctccaagaggggacg
gtagagaccagtgagggccttaaaaaagttgacgtgcgcattcttgctgcaaactcaatg
gatatcgagaaagcactaatagatggcgattttaatgaagacctctaccactacattaat
gtgctgagaattaatgttcctagcctcaaagagcgttctggtgatattgcgttgctggct
cgccatttcttacaggtctatgcgaaagattataatgcccaagcacgcagctttagtgaa
gatgccatcaagtccctagctcgttatcactggcctggcaatgttcgtgaactgatgaac
ttaattaagcgcgttgttctaatgtcagagcaaccaattatcgaagaaagtcagctcgaa
atgccaaaaagaaataacggcaagcagagcctcaagagcattcgtgaacgcagcgaacgc
gatgccctgatgttggtgcttgagtcacacgatggacaagtatctcaggcggcgaaagag
ctaggcgtatctagagcgacaatgtatcgcttgctgaataaacacaacctgatcagtgaa
aattccatgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (24)   
   Pfam (24)   
All databases (31)   

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