KEGG   Vibrio astriarenae: GT360_13145
Entry
GT360_13145       CDS       T06574                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
vas  Vibrio astriarenae
Pathway
vas03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vas00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    GT360_13145 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vas03021]
    GT360_13145 (rpoB)
   03400 DNA repair and recombination proteins [BR:vas03400]
    GT360_13145 (rpoB)
Enzymes [BR:vas01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     GT360_13145 (rpoB)
Transcription machinery [BR:vas03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     GT360_13145 (rpoB)
DNA repair and recombination proteins [BR:vas03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      GT360_13145 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: QIA64380
UniProt: A0A7Z2T508
Position
1:complement(2824910..2828938)
AA seq 1342 aa
MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQDPEGQYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKSTEEILGLFFEKVNFEVKDQTLLME
LVPDRLRGETATFDIAANGTTYVEQGRRVTARHIRQLEKDGVEHIEVPVEYIVGKVASKD
YINEATGEIICAANQELSLEALANLSQAGHKALEVLFTNDLDHGPFMSDTLRIDSTVDRI
SALVEIYRMMRPGEPPTKEAAEALFESLFFSDERYDLSTVGRMKFNSSIMREDAQEQGTL
DETDIIEVMKKLIAIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVDGVVT
DEVDYLSAIEEGQFVIAQANTVLTEAGTFSEELITARQKGESGLHPRENVDYMDVATNQV
VSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNIAVDSGVTAVAKR
GGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVLRG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCVA
RDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL
TEEFQILEGGLLNRVKALLIEGGYTEAKLDTIERKKWLELTLEDDAQQTQLEQLAEQYDE
LKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDETGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMVKEQQELAK
FREFLQKVYDLGDTRQKIDVAALSDDEVRTLIKNLRGGLPIATPVFDGASERSIKDLLKL
GGLPESGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHSMEPGMPE
SFNVLLKEIRSLGINIELEDEE
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcctataccgagaaaaagcgcatccgtaaggactttggtactcgtccacaa
gtgttggacattccatacctgctatcgatccagctcgattcgttcgataaattcatcgaa
caggatcctgagggacagtacggtcttgaagctgctttccgttctgttttcccaattcag
agctacaacggcaactctgagctgcaatacgttagctaccgtcttggtgagccagttttt
gacgttaaagaatgtcaaatccgcggtgtaacttattcaaaaccactacgcgtaaaacta
cgccttgtgatctttgataaagacgcgccagcaggtactgtaaaagatattaaagaacaa
gaagtctacatgggtgaaattccactcatgactgacaatggtaccttcgtaattaatggt
accgagagggttatcgtatcccagctgcacagaagccctggtgtattcttcgacagcgat
aagggtaagacccactcttcaggtaaagtactttataacgcacgtgtaattccttaccgt
ggttcatggctcgacttcgagtttgatcctaaggacaacctatacgttcgtatcgaccgt
cgtcgtaagcttccagcttcaatcatccttcgtgcactaggcaaatcgacagaagagatc
cttggtctattcttcgagaaggtgaactttgaagttaaagatcaaactctacttatggag
ttggttccggatcgtctacgcggcgaaacagcaacatttgatattgctgcaaacggcaca
acttacgttgagcaaggtcgtcgtgtaacggctcgtcatatccgccaacttgagaaagac
ggcgttgagcacatcgaagtaccagtagagtacatcgttggtaaagtcgcttctaaagat
tacatcaatgaagcaactggcgagatcatctgtgcggcgaaccaagaacttagcctagaa
gctctagctaacctatctcaggctggccacaaagcgctagaagttctgttcactaacgac
ctggaccacggtccgttcatgtctgatacgctacgtatcgacagcacggttgaccgtatc
tctgcgctagtagaaatctaccgcatgatgcgtcctggtgagccaccaacgaaagaagct
gcagaagcgctattcgaaagcctattcttctctgacgagcgttacgacttatcgactgta
ggtcgtatgaagttcaacagctcgatcatgcgtgaagacgctcaagagcagggtactcta
gacgaaactgatatcatcgaagtgatgaagaagcttatcgctatccgtaacggtattggc
gaagtggatgatatcgaccaccttggtaaccgtcgtatccgttctgttggcgaaatggct
gagaaccaattccgtgttggtctagtacgtgttgaacgtgcagttaaagagcgtctaagc
cttggtgatcttgatgcgatcatgcctcaagacctgatcaacgctaagccaatctctgca
gcagttaaagaattctttggctcttcacagctgtctcagttcatggaccaaaacaacccg
ctttcagaagtaacgcacaagcgtcgtatttctgcgttgggtcctggtggtctaacacgt
gagcgtgctggcttcgaagtacgtgacgttcacgtaactcactacggtcgtctatgtccg
atcgaaacacctgaaggtccaaacatcggtctgatcaactctctatctgcgtttgcgcgt
tgtaacgagtacggtttcctagagactccataccgtcgcgttgtagatggcgttgttact
gacgaagtagattacctatctgctatcgaagaaggtcagttcgtaatcgctcaggcgaac
acagttcttactgaagcaggcacattctctgaagagctaatcactgctcgtcagaaaggt
gaatctggtctacaccctcgtgaaaacgtcgactacatggacgttgcaacgaaccaggtt
gtatctatcgctgcgtcgcttatcccgttcctagaacacgatgatgcgaaccgtgcattg
atgggtgcgaacatgcaacgtcaggccgttccaacacttaaggctgacaagcctctagtt
ggtactggtatcgagcgcaacatcgcggttgactctggtgttacagcggttgctaaacgt
ggtggtgttatccagtctgtggacgcatctcgtatcgtagttaaggttaacgaagaagag
ttgattcctggcgaagcgggtatcgatatctacaacctaactaagtacacacgttcaaac
caaaacacgtgtatcaaccagcgtccatgtgtgatgccaggtgaaccagtactacgtggt
gacgttcttgctgatggtccttcaacagaccttggtgagctagcgcttggtcagaacatg
cgtatcgcattcatgccttggaacggttacaacttcgaagactcgatcttagtatctgag
cgcgtagttcaagaagaccgcttcacgacgatccacattcaagagctttcttgtgtggcg
cgtgataccaagcttggtgcggaagagatcacggctgatattccaaacgtaggtgaatct
gctctgtctaaactagacgagtcaggtatcgtttacatcggtgctgaagttaagggtggc
gacatcctagttggtaaagtaacccctaaaggtgaaactcagctaacgcctgaagagaag
ctactacgtgctatcttcggtgaaaaagcatctgacgttaaagatacttcactgcgtgta
ccaaactctgtttcaggtacgattatcgacgtacaagtcttcactcgcgatggcgtagag
aaagacaagcgtgcgcttgaaatcgaacagatgcagcttaaagaagcgaagaaagaccta
actgaagagttccaaattcttgagggtggccttctaaaccgtgttaaagcacttctaatc
gaaggcggttacacggaagcgaaactagacactatcgaacgtaagaagtggctagagcta
acgcttgaagacgatgcacaacaaactcagctagaacaactagcagagcagtacgacgag
cttaaagctgacttcgataagaagttcgaaactaagcgtcgcaagatcacacaaggtgat
gatctagcacctggcgtactgaagatcgttaaggtttacctagcggttaaacgtcgcatc
cagcctggtgataagatggcgggtcgtcacggtaacaagggtgtaatctctaagatcaac
cctgttgaagacatgccttacgatgaaactggtcagccagtagatatcgtacttaaccca
ctgggtgtaccttcgcgtatgaacatcggtcagatcctagaagtacacttaggtctggca
gcgaaaggtatcggtgacaagatcaaccagatggtgaaagagcagcaagaactggctaag
ttccgcgagttccttcagaaggtttatgatcttggtgatacccgccagaagatcgatgtt
gcagctctatctgatgatgaagttcgcacactgatcaagaacctacgcggcggtctaccg
atcgcaacgcctgtgttcgacggtgcatctgagcgttctatcaaagaccttctaaaacta
ggtggcctaccagaatctggtcagctaactctgtttgatggtcgtactggtgatgcgttt
gagcgtcctgtaactgttggttacatgtacatgctgaaactgaaccaccttgttgatgac
aagatgcacgctcgttcaacgggttcttacagcctagtaactcagcagccacttggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcactagaagcatac
ggtgctgcttacacccttcaagagatgctaaccgtgaaatcggatgatgtgaatggccgt
actaagatgtataagaacatcgtagatggcaaccacagcatggaacctggcatgccagaa
tcgttcaacgtattgttgaaagagattcgctcgctaggtatcaacatcgagctagaagac
gaagagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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