KEGG   Vibrio anguillarum NB10: VANGNB10_cI0564
Entry
VANGNB10_cI0564   CDS       T03657                                 
Name
(GenBank) sigma-54 interacting regulatory protein
  KO
K20919  sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
vau  Vibrio anguillarum NB10
Pathway
vau05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vau00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    VANGNB10_cI0564
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:vau03000]
    VANGNB10_cI0564
Transcription factors [BR:vau03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    VANGNB10_cI0564
SSDB
Motif
Pfam: VpsR Sigma54_activat Sigma54_activ_2 HTH_8 AAA AAA_22 AAA_16 HTH_29 AAA_13 HTH_7 AAA_5 HTH_22 AAA_2 HTH_17 HTH_50 HTH_IclR HTH_23 HTH_Tnp_1_2 HTH_30 NB-ARC Arf
Other DBs
NCBI-ProteinID: CDQ49479
UniProt: A0A1Y0NZB9
Position
1:676501..677835
AA seq 444 aa
MGTQFRMDSVPGSLVVVGGTYEPWLSVLEQVGWRCTQCADLRKADALFAETGPCIGIVDL
SHDEFSLNGIANLVSNHKQVRWLAFIRESQLSSDTICQFIVNFCIDFFTAPIPDAQLLST
IGHQLGMLKLEKKVWPHYGATGDIGLIGESTPMKRLRDQIKRIGPTDVSILIYGENGTGK
ETVARAVHKTSSRAQKPFISVNCRALSESRFECELFGIGCEDSSQTSLLERADGGTILLK
DILTLPKSQQANLLRFLQEGTIETSTGVKEVDVRILAANSSDIEKALIDGNFNEELYHYI
NVLRINVPSLKERAGDIALLARHFLQEYSKEFNAQARSFTEEAARSLARYHWPGNVRELM
NQIKRVVLMSDSVMLDELQLDLPKRSDGKRSLKSIRERSERDALLLVLESNSGQVSMAAK
ELGVSRATMYRLLNKHNLITENTY
NT seq 1335 nt   +upstreamnt  +downstreamnt
atgggcactcaattccgaatggattctgtccctggttcgcttgtcgtcgttggtgggaca
tacgagccttggttatctgtacttgaacaggttggttggcgttgtacacaatgcgcagat
ttacgtaaagcggatgccttgtttgcagaaacaggcccatgcattggtattgttgatttg
agccatgatgaattcagcctcaatggcattgcaaatttggtcagcaaccataaacaagta
cgttggttagcgttcattcgcgaatcacagttgagctcggatacgatttgccaattcatt
gttaacttttgtatcgacttttttacggcgccgattcccgatgcgcagctactgagcacc
attggacaccaacttggaatgcttaagttagagaaaaaagtatggccacattatggagca
acaggggatattggtttaattggtgagtccactcccatgaagcgcttgcgtgatcagatc
aaacgaatcggccctacagatgtcagtatcctcatttatggggaaaatggaacgggcaaa
gagacggtcgcgagagcggtacacaaaacctcatctcgcgcacaaaaaccttttatttca
gtgaattgccgagctttatcggagagccgctttgaatgtgagctgttcggtattggttgt
gaagactcatctcaaacttcattattggagcgggcagatggtgggacgatcctacttaaa
gatattctcacgctacctaaaagccaacaagctaacctcttgcgcttcctgcaagaagga
acgatagaaacttcaacgggtgtcaaagaggtggatgtgcgtattttggccgccaactct
tccgatattgaaaaagcgctgattgatggcaattttaacgaagagctgtaccactatatc
aacgtattgcgtattaatgtcccgagcttaaaagagcgggcgggtgatattgctttactg
gcacgacacttcttgcaggagtattcaaaagagtttaacgcgcaggcgcgcagttttact
gaagaagcggcgcgctcattggctcgttatcactggccgggtaacgttcgtgagctgatg
aatcagatcaaacgtgtggtgctgatgtctgattcagtcatgttggatgaattgcaactc
gacttaccaaaacgcagtgatggtaagcgcagcctaaaaagcattcgtgagcgctcagag
cgagatgcgctattactggttctagaatcgaactcagggcaagtatcaatggccgccaaa
gagctaggtgtatctagagctactatgtatcgcttgcttaataaacataacttaatcact
gaaaatacctattaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (21)   
   Pfam (21)   
All databases (29)   

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