KEGG   Verrucomicrobia bacterium IMCC26134: IMCC26134_05680
Entry
IMCC26134_05680   CDS       T03830                                 
Name
(GenBank) hypothetical protein
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
vba  Verrucomicrobia bacterium IMCC26134
Pathway
vba03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vba00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    IMCC26134_05680
  09124 Replication and repair
   03420 Nucleotide excision repair
    IMCC26134_05680
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vba03021]
    IMCC26134_05680
   03400 DNA repair and recombination proteins [BR:vba03400]
    IMCC26134_05680
Enzymes [BR:vba01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     IMCC26134_05680
Transcription machinery [BR:vba03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     IMCC26134_05680
DNA repair and recombination proteins [BR:vba03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     IMCC26134_05680
SSDB
Motif
Pfam: Helicase_C_2 DEAD_2 ResIII PDDEXK_1 DEAD Bac_DnaA AAA_16
Other DBs
NCBI-ProteinID: AKC83943
UniProt: A0A0E3YWR8
Position
complement(1526562..1528958)
AA seq 798 aa
MNLDHSNRIARFAVGELATFAPGPRATSDGASARWRMEIGSHWHRELRTAAGPDDSKCQH
EAVVRGTLARRGWRFELEGRIDQLHLTGSGYVVREIKTTLEKLPRDSDELRAAHPSHFIQ
LGLYIRLSELINPGQSFRGQLLFVEAGTGLQQGVDFNDRDLAATEAHLDLVADFIEQRHA
SLARLRSLTWQPAFAAPRPGQETILADLAAALDPAADGTQPPPVVLAAPTGYGKTGVLLE
AAFAALRAGRADRVVYLTGKSTGQLHVLSTLQSMLAPPAANTGAAPPQLSAWNIRPKREH
CVNDVFHCTRERCRFLHDLPRRYQQAGLSRFHLFPDEARDLPALRAAGLSAEICPYEIAR
ATLPACSVWLGDFNYLFAPANRGVFVDQPTWDPAATLLVIDEAHHLPARVAEAHSHALAA
DDLHGLLADLTDATARPLRRALEALWRLLAALPPADSLDLDTEDDLAAALRTATEALLKH
PPDHAALPPPSADLLFRLPALLAWLEDHTLEKLLWSPAAAMLRFTCLDAAPVIGKQLREF
AAVILATATPPPPDVFGALLGLEQPSPGIARPALTLLTPAAPWRDRAYDVALDLRVDTTY
RRRESHHAATAATLATLREASAGPVVVFFPSYNYAERIIDHLDRTQPGLRCALQPRAVDL
ATQSAWIDVQLALADVLVFVLGGSFAEGIDHLGGRITHAMVVGPALPELNALQRAREAAL
ARHAPAPEAFRRTYLVPGLQKVNQALGRLVRAPGQRCRVLLHCRRFADPAYAALLAPEYQ
LGTHVVNDADLSSWLDNQ
NT seq 2397 nt   +upstreamnt  +downstreamnt
ttgaacctcgatcactccaaccgcatcgcccgtttcgccgtaggcgaactcgccaccttc
gcccccggcccccgcgccaccagcgacggcgcctccgcccgctggcgcatggagataggt
tcgcactggcatcgcgagctccgcaccgccgccggccccgatgattccaaatgccagcac
gaggccgttgtgcgcggcacgctcgcccggcgcggctggcgctttgagctcgagggccgc
atcgaccagctccacctcaccggctccggctacgttgtccgcgagatcaagaccaccctc
gaaaaactcccgcgcgacagcgacgagctccgcgccgcccacccctctcattttatccag
ctcggtctctacatccggctcagtgagctcatcaaccccgggcagtctttccgaggacaa
ctcctcttcgtcgaggccggcacaggcctgcaacaaggcgtcgacttcaacgaccgcgac
ctcgccgccaccgaggcccacctcgatctcgtcgccgatttcatcgaacaacgccacgcc
agcctcgcccgccttcgctcgctcacctggcagcccgccttcgccgccccccgccccggc
caggaaaccatcctcgccgatctcgcggccgcgctcgaccccgccgccgacggcacccaa
ccgccacccgtcgtgctcgccgcccccaccggctacggcaagaccggcgtcctgctcgag
gccgccttcgccgcgctccgcgccggacgggccgaccgcgtcgtttacctgaccggcaaa
tcgacgggacaactccacgtgctcagcaccctgcaatccatgctggccccgcccgccgcc
aacaccggcgcggccccgccgcagctctccgcttggaatatccgccccaaacgcgaacac
tgcgtcaacgacgtcttccactgcacccgcgaacgctgccgctttctccacgatctgccc
cgccgctaccaacaggccggcctgtcgcgcttccatctctttccggacgaagcccgggac
ctgcccgcactacgcgccgccggcctgtccgccgaaatctgcccctacgaaatcgcccgc
gccaccctgcccgcctgctcagtctggctcggcgatttcaactacctcttcgcccccgcc
aaccgcggcgtcttcgtcgatcaacccacctgggaccccgccgccacgctgctcgtgatc
gacgaagcccaccacctgcccgcccgtgtggccgaagcccactcgcacgccctcgccgcc
gacgatttgcacggcctgctcgctgatttaaccgacgctaccgcacgtccattgcgccgc
gccttggaagcgctctggcgcctgctggccgcactcccccccgccgattcgttggacctc
gataccgaagacgacctcgccgccgctttgcgcaccgccaccgaggcgctgctcaagcat
ccgcccgatcacgccgcactgccgcccccctccgccgacctgctcttccgcctgcccgcg
ctgctggcctggctggaggatcacaccctggaaaaactcctctggtcccctgccgccgcg
atgctgcgcttcacctgcctagatgccgcgcctgtcattggcaaacaactacgcgaattc
gcggccgtcattctcgccaccgcgacgccaccgccgccggacgtttttggagcgttgctc
ggcctggagcagccctcccccgggatcgcacgacctgcgctcaccttgctcacccctgcc
gcaccctggcgggatcgcgcctacgacgtcgcgctcgacctgcgcgtagacaccacctac
cgccgccgcgaaagccaccacgccgccaccgccgcgacgctcgccacgctgcgcgaggcc
tcggccgggccggtcgtggtgtttttccccagttataactacgccgagcgcatcatcgac
cacctcgaccgcacccagcccggcctgcgctgcgccctgcaaccccgcgccgtcgacctc
gcgacccaatccgcctggatcgacgtgcagctcgccctcgccgacgtcctcgtcttcgtg
ctcggaggcagcttcgccgagggtatcgaccacctcggtggtcgtatcacccacgcgatg
gtggtcggccctgccctgcccgagctcaacgccctccaacgcgcccgcgaagccgctctc
gcccgccatgcgcccgcgcctgaagcatttcgccgcacctacctcgtgccaggcctgcaa
aaggtaaaccaggctctgggccgcctcgtgcgcgcccccggccagcgctgccgtgtgctg
ctccactgccgtcgcttcgccgaccccgcctacgccgctctactcgccccagaataccag
ttgggaacccacgtcgtaaacgacgcagacctgtcgtcgtggctcgataaccaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (32)   

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