KEGG   Nibricoccus aquaticus HZ-65: CMV30_09295
Entry
CMV30_09295       CDS       T05426                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
vbh  Nibricoccus aquaticus HZ-65
Pathway
vbh03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:vbh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CMV30_09295
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vbh03400]
    CMV30_09295
Enzymes [BR:vbh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CMV30_09295
DNA repair and recombination proteins [BR:vbh03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CMV30_09295
SSDB
Motif
Pfam: LigD_Prim-Pol AlaDh_PNT_C Vit_b-sht_shell
Other DBs
NCBI-ProteinID: ATC64133
UniProt: A0A290Q6T3
Position
complement(2292613..2293539)
AA seq 308 aa
MSTSLKTTLDVGGTKVAVSNLKKVLYPDVSFTKGDVIDYYIRISKVLLPHLKNRPITLKR
YPDGVNGFFFYEKQCPPHRPKWIKTTTVPKSDGTDIHYCVMNDLPALVWAANLADLELHT
FLHRAPAIHRPTALAFDLDPGAPANIVQCCEVALLLKSIFDSFGLKSFAKTSGSKGLQIY
VPLNTPSATYEKTKTFAHQLAILLEQQAPKLVVSKMLKTLRRGKVLVDWSQNDDHKTTIN
VYSLRAKPHPTVSTPVTWAEVSAALKKKNAKLLTFETTDVLKRVKKHGDLFADVLTLKQK
LPALSALG
NT seq 927 nt   +upstreamnt  +downstreamnt
atgagcacttccctcaaaaccacgctcgatgtcggcggcacgaaagtcgccgtctccaat
ctcaaaaaagtcctgtatccggatgtcagtttcaccaaaggcgacgtcatcgattactac
atccgcatctcgaaagtcctcctccctcatctcaaaaatcgccccatcacgctcaagcgc
taccccgacggcgtgaacggctttttcttctacgagaaacaatgcccgccccaccgcccc
aagtggatcaagacgaccaccgtccccaaatccgacggcaccgacatccactactgcgtg
atgaacgacctccccgcgctcgtctgggccgccaacctcgccgacctcgaactccacacc
tttctccaccgcgcccccgcgatccaccgccccaccgccctcgccttcgacctcgatccc
ggcgcccccgccaacatcgtccaatgctgtgaagtcgccctgttgctcaagtctatcttc
gactccttcggcctgaaatccttcgccaaaacctccggctccaaaggacttcaaatctac
gtcccgctcaacacgccctccgccacctacgagaaaaccaaaaccttcgcgcaccaactc
gccatcctcctcgagcaacaagcccccaaactcgtcgtctccaaaatgctgaaaacactc
cgccgcggcaaagtcctcgtcgattggagccagaacgacgaccacaagaccacgatcaac
gtctactccctccgcgccaaaccccacccgacagtctccacgcccgtcacgtgggccgaa
gtctccgctgcgctgaaaaagaaaaacgcgaaactcctcaccttcgaaacgaccgacgtc
cttaaacgcgtcaaaaaacacggcgacctcttcgccgacgtcctcacgctgaagcaaaaa
ctccccgccctcagcgctctcggataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

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