KEGG   Variovorax boronicumulans: CKY39_01305
Entry
CKY39_01305       CDS       T05068                                 
Symbol
icmF
Name
(GenBank) type VI secretion system membrane subunit TssM
  KO
K11891  type VI secretion system protein ImpL
Organism
vbo  Variovorax boronicumulans
Pathway
vbo03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vbo00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    CKY39_01305 (icmF)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vbo02044]
    CKY39_01305 (icmF)
Secretion system [BR:vbo02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   CKY39_01305 (icmF)
SSDB
Motif
Pfam: IcmF-related IcmF-related_N IcmF_C IcmF_helical DUF4381 DUF3262
Other DBs
NCBI-ProteinID: ATA52010
UniProt: A0A250DCE3
Position
283829..287464
AA seq 1211 aa
MLRALFRFLVSRDLWVFFGLVALAFLIWVIGPVIAVGRYRPLEGEFVRIVVIALMFGVWL
VRVAYRKWRERRLNAQLLHQLRTPSPKAKEAKPEEAPEIKELHSGFADATAVLKNMRFGP
GPGGKAAGRFALFDRQYLYQLPWYIFIGAPGSGKTTALVNSDLDFPLADQLGKAAVRGIG
GTRNCDWWFTNEAVLIDTAGRYTTHESHRETDEGEWKGFIELLKKFRPRQPINGAILTIS
IADLPLADDAQRARHAMALRKRLLELRNDLGINFPVYVLVTKTDLLAGFNEYFGSLGRAE
RQQVWGFTFPIEGNPADPAKADLRERFHQEYKLLHQRLDERLPELMATEPDPMRRAQAYL
LPQQFASFEDILGTFLADVFNPSKFEVAPLLRGVYFTSGTQEGTAFDRVMGAIKRYLQVN
APPAPPPGPGKSYFLKELLQQVIFRDAGVAGTNLRWYRRRRAIDLAGYALVGVLAVVLLG
AWANSWRHNKAYVAEVDGNAKAFNKAAARGELPTVVDSSGDIASSLLILDRLRDLPKSAE
FDIGDPPVGYRFGLYQGEKLQAATDGVYQRALETVLLPQAAQRVEQSLREAAKLDAEYSY
EALKAYLMLYDPERYDADFLQAWLLTDVDRKIGASLTREQRTNLEAHLKTLFADRVVSSP
FTKDDKLIAQTRERLAGVPLAQRSYARLRRILLQTSAPNAFTIAEAGGAESALVVRRASG
KPLTDGIPTLFTYRGYWDIFDKRMAETTLALEQEDRWVLQIRAPGIADITSRELLLREVR
RLYLSDYIRTWDEYLADIRLAESKSLLQSIQMTRVLSTGESPMSRLIRGAARETDLLRNH
DEATRSLLDQAQNRVTSTRERIEQLIGQPDGSQRRNTAPDRPESLVDNHFAPLRRMVTAP
KAGGQTPLDQTAALINELYTFLTATDTALRSGNIPPPGDAVTKLQAEAGRLPVPFQGMLN
DLSATASSKAAAVTRQNIGQNAAATIGQFCSQAIAGRYPFARGSNRDVAAGDFAQLFAPG
GMMDDFFQKNLASQVDTSVNPWTFKRGVDGSASGRSAYLDAFQKAQAIRDVFFTGMAGGR
TPSFTLDIRPEDMDATLTQFTLDIDGQTVRYAHGPQAPSSIKWPGPRNSNQVRLQVTVAN
GTPAGGIVTEGPWALHRLFDKASISSGRTPESFNATFDLQGKKVVLAVTANSVYNPLRLS
QMNSFSCPGKS
NT seq 3636 nt   +upstreamnt  +downstreamnt
atgctgcgcgcgctcttccgctttctcgtcagccgcgacctctgggtcttcttcgggctg
gtcgcgctcgcgttcctgatctgggtcatcggcccggtgatcgccgtgggccgctaccgc
ccgctcgaaggcgagttcgtgcgcatcgtggtcatcgcgctgatgttcggcgtgtggctg
gtgcgcgtggcctaccgcaagtggcgcgagcgtcgcctgaacgcgcagctgctgcaccag
ctgcgcacgccgtcgcccaaggcgaaggaggccaagcccgaagaggcgcccgagatcaag
gagctgcacagcggctttgccgacgccaccgcggtgctgaagaacatgcgcttcggcccg
ggccccggcggcaaggcggcggggcgcttcgcgctgttcgaccggcagtacctctaccag
ctgccctggtacatcttcatcggcgcgccgggctcgggcaagaccacggcgctggtcaac
tccgacctcgactttccgctcgccgaccagctcggcaaggccgcggtgcgcggcatcggc
ggcacgcgcaactgcgactggtggttcaccaacgaggccgtgctcatcgacacggccggg
cgctacaccacgcacgagagccaccgcgagaccgacgagggcgagtggaagggcttcatc
gagctgctcaagaagttccggccgcgccagccgatcaacggcgcgatcctcaccatcagc
atcgccgacctgccgctggccgacgacgcgcagcgcgcgcgccacgcgatggcgctgcgc
aagcggctgctcgagctgcgcaacgacctgggcatcaacttcccggtgtacgtgctggtc
accaagaccgacctgctggccggcttcaacgagtacttcggctcgctgggccgcgccgag
cgccagcaggtgtggggcttcaccttcccgatcgagggcaaccccgccgacccggccaag
gccgacctgcgcgagcgctttcaccaggaatacaagctgctgcaccagcgcctggacgag
cgcctgcccgagctgatggcgaccgagcccgacccgatgcggcgcgcgcaggcctacctg
ctgccgcagcagttcgcgagcttcgaggacatcctgggcaccttcctggccgacgtgttc
aacccgtcgaagttcgaggtggcgccgttgctgcgcggcgtgtacttcaccagcggcacg
caggagggcacggccttcgaccgcgtgatgggcgccatcaagcgctacctgcaggtgaac
gcgccgcccgcgccgccgccgggaccgggcaagagctacttcctcaaagagctgctgcag
caggtgatcttccgcgacgcgggcgtggcgggcaccaacctgcgctggtatcggcgtcgc
cgcgccatcgacctcgcgggctacgcgctggtcggcgtgctcgcggtggtgctgctgggc
gcgtgggccaacagctggcgccacaacaaggcctacgtggccgaggtcgacggcaacgcc
aaggccttcaacaaggccgccgcgcgcggcgagctgccgacggtggtcgattcgagcggc
gacatcgcgagctcgctgctcatcctcgaccgcctgcgcgacctgcccaaatcggccgag
ttcgacatcggcgatccgcccgtgggctaccgcttcgggctctaccagggcgagaaactg
caggccgccaccgacggcgtgtaccagcgcgcgctcgaaaccgtgctgctgccgcaggcc
gcgcaacgcgtcgagcagtcgctgcgcgaggccgcgaagctcgacgccgaatacagctac
gaggcgctcaaggcctacctcatgctgtacgaccccgagcgctacgacgccgacttcttg
caggcctggctgctcaccgacgtcgaccgcaagatcggcgcctcgctcacgcgcgagcaa
cgcacgaacctcgaagcgcacctgaagacgctgttcgccgaccgcgtcgtgagctcgccc
ttcaccaaggacgacaagctcatcgcgcagacgcgcgagcgcctggcgggcgtgccgctg
gcgcagcgctcgtacgcgcggctgcgccgcatcctgctgcagaccagcgcgcccaacgcc
ttcaccatcgccgaggcgggcggcgcggagtcggcgctggtggtccggcgcgccagcggc
aagccgctgaccgacggcattcccacgctcttcacctaccgcggctactgggacatcttc
gacaagcgcatggccgagaccacgctggcgctggagcaggaagaccgctgggtgctgcag
atccgcgcgccgggcatcgccgacatcacctcgcgcgagctgctgctgcgcgaggtgcgg
cgcctgtacctcagcgactacatccgcacctgggacgagtacctggccgacatccggctg
gccgagagcaagtcgctgctgcagagcatccagatgacgcgcgtgctgtcgaccggcgag
tcgccgatgtcgcgcctcatccgcggcgcggcgcgcgagaccgacctgctgcgcaaccac
gacgaggccacgcgcagcctgctcgaccaggcgcagaaccgcgtgaccagcacgcgcgag
cgcatcgagcagctcatcggccagcccgacggcagccagcgccgcaacaccgcgcccgac
cggcccgagtcgctagtcgacaaccacttcgcgccgctgcggcgcatggtgaccgcgccc
aaggctggcggccagacgccgctggaccagacggccgcgctcatcaacgagctgtacacc
ttcctcaccgccaccgacaccgcgctgcgcagcggcaacatcccgccgcccggcgacgcc
gtgaccaagctgcaggccgaagcggggcgtttgccggtgccgttccagggcatgctgaac
gacctgtcggccaccgcgtcgtcgaaggccgcggcggtgacgcggcagaacatcgggcag
aacgcggccgcgaccatcgggcagttctgcagccaggcgatcgcggggcgctacccgttc
gcgcgcggctccaaccgcgacgtggcggccggcgacttcgcgcagctgttcgcgcccggc
gggatgatggacgacttcttccagaagaacctcgcctcgcaggtcgacacctcggtcaac
ccgtggaccttcaagcgcggcgtggacggcagcgcgtcggggcgctcggcgtacctcgat
gcgttccagaaggcgcaggcgatccgcgacgtgttcttcacgggcatggcgggtgggcgc
acgccctcgttcacgctggacatccggcccgaggacatggacgccacgctcacgcagttc
acgctggacatcgacggccagacggtgcgctacgcccacggcccgcaggcgcccagcagc
atcaagtggcccggcccgcgcaacagcaaccaggtgcgactgcaggtcacggtggccaac
ggcacgccggccggcggcatcgtgaccgaggggccgtgggcgctgcaccggctgttcgac
aaggcctcgatctcgtcggggcgcacgcccgagtcgttcaacgcgaccttcgacctgcaa
ggcaagaaggtggtgctcgcggtgacggccaacagcgtctacaacccgctgcggctgtcg
cagatgaacagcttctcctgccccgggaaatcctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

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