KEGG   Variovorax boronicumulans: CKY39_27210
Entry
CKY39_27210       CDS       T05068                                 
Name
(GenBank) DNA-directed RNA polymerase subunit omega
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
vbo  Variovorax boronicumulans
Pathway
vbo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vbo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CKY39_27210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vbo03021]
    CKY39_27210
   03400 DNA repair and recombination proteins [BR:vbo03400]
    CKY39_27210
Enzymes [BR:vbo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CKY39_27210
Transcription machinery [BR:vbo03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CKY39_27210
DNA repair and recombination proteins [BR:vbo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CKY39_27210
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-ProteinID: ATA56515
UniProt: A0A1E7U515
Position
5892652..5892855
AA seq 67 aa
MARITVEDCLVQIPNRFQLVLAATYRARMLSQGHAPKIESKNKPAVTALREIAEGKIGIE
MLKKVPG
NT seq 204 nt   +upstreamnt  +downstreamnt
atggcccgcatcaccgtcgaagattgtctcgttcagatcccgaaccgcttccagctcgtt
ctcgccgccacgtaccgtgcgcgcatgctgagccaaggccacgcccccaagatcgagagc
aagaacaagcccgctgtcacggccctgcgcgaaatcgccgaaggcaagatcggcatcgag
atgctcaagaaagtgccgggctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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