KEGG   Variovorax boronicumulans: CKY39_27235
Entry
CKY39_27235       CDS       T05068                                 
Name
(GenBank) HU family DNA-binding protein
  KO
K03530  DNA-binding protein HU-beta
Organism
vbo  Variovorax boronicumulans
Brite
KEGG Orthology (KO) [BR:vbo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vbo03032]
    CKY39_27235
   03036 Chromosome and associated proteins [BR:vbo03036]
    CKY39_27235
   03400 DNA repair and recombination proteins [BR:vbo03400]
    CKY39_27235
DNA replication proteins [BR:vbo03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    CKY39_27235
Chromosome and associated proteins [BR:vbo03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    CKY39_27235
DNA repair and recombination proteins [BR:vbo03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      CKY39_27235
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 HU-CCDC81_euk_1
Other DBs
NCBI-ProteinID: ATA56518
UniProt: A0A1E7U4L8
Position
5896805..5897215
AA seq 136 aa
MNRIELVEKIATTHNLSKAEAARVLETITSSVVAAVKKGDSVQLVGFGTFKQVARAARSG
FNPQAGTKIKIAATKVPKFVAGAAFKAAIDPKAAKRKAEKAAAAPAAKKAAAPKKAAVTK
AVVAKAPAKKAVAKKK
NT seq 411 nt   +upstreamnt  +downstreamnt
atgaaccgcatcgaactggtcgagaagatcgccaccacccacaacctgagcaaggccgag
gccgcacgcgtcctcgaaacgatcaccagcagcgtcgtcgctgccgtgaagaagggcgat
tcggtccagctggtcggcttcggtactttcaagcaagtcgcacgcgctgcacgctcgggc
ttcaacccccaggccggcaccaagatcaagatcgccgccaccaaggtgccgaagttcgtc
gccggcgctgccttcaaggccgccatcgaccccaaggccgccaagcgcaaggctgaaaag
gccgctgctgcacccgctgccaagaaggccgccgcccccaagaaggctgctgtcaccaag
gcagtcgtcgccaaggctcccgccaagaaggccgtcgccaagaagaagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system