KEGG   Verrucomicrobia bacterium S94: EGM51_05845
Entry
EGM51_05845       CDS       T05990                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
vbs  Verrucomicrobia bacterium S94
Pathway
vbs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vbs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EGM51_05845
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vbs03019]
    EGM51_05845
   03009 Ribosome biogenesis [BR:vbs03009]
    EGM51_05845
Enzymes [BR:vbs01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     EGM51_05845
Messenger RNA biogenesis [BR:vbs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     EGM51_05845
Ribosome biogenesis [BR:vbs03009]
 Prokaryotic type
  rRNA helicases
   EGM51_05845
SSDB
Motif
Pfam: DEAD Helicase_C ResIII DRTGG SPP1_GP23-1 P-loop_SecA AAA_30 Helicase_RecD DUF6392 Glyco_hydro_109_C Coprogen_oxidas
Other DBs
NCBI-ProteinID: QBG49255
UniProt: A0A4P6PGW1
Position
complement(1422994..1424106)
AA seq 370 aa
MKSFEALGITDDYIKGLNELGIKHPTGIQAKTIPMILGKQTDFIAQAQTGTGKTAAFGLP
LLASMDPKNPQIQGLVLAPTRELAKQVQKQLFRFTKYTERMFSYVVCGGDKIDVQIEALK
RPTQVLVATPGRLMDLVRRKAVDLSGVRTVVLDEADEMLKLGFREDIDAVLKLTAGQRNV
WLFSATMPAGIKKMISKHLGDESPFLKVDKQHIVNPDIRHLLIRCKEGEKLEQILDFLKE
RGQQQGVIFCRTRQDTIDFGQSLEKAGITHAVLHGDLMQSERDKIMRMFKKGRVRLLVST
DVSARGIDVDNLSFVIHHQLPEKNEYYTHRSGRTGRAGKSGISLVLITPSDEKRIIKLAR
DLKIQFREIA
NT seq 1113 nt   +upstreamnt  +downstreamnt
atgaaatcatttgaagcgctcggaataaccgacgattatattaaaggactgaatgagctg
gggattaagcatcctacaggcattcaggcgaaaacgattccgatgattctcgggaaacag
accgatttcattgcccaggcgcagacgggtaccgggaagaccgcggcgttcgggctgccg
ttgctggcgtcgatggatccgaaaaatccgcagattcagggtctggtgctggcaccgacg
cgggagctggcgaagcaggtgcagaagcagctgttccgttttacgaaatataccgagcgc
atgttttcctatgtcgtgtgtggcggggataaaattgatgtgcagattgaggcgctgaag
cgtccgacgcaggtgctggtggcgacgccggggcgcctaatggacttggtgcggcgcaag
gcggtcgatctctccggagttcggaccgtggtgctggacgaagccgatgaaatgctgaag
ctcggctttcgcgaggatattgatgccgtgctgaaactgaccgcggggcagcggaatgtc
tggctgttttcagcgacgatgccggcgggcataaaaaaaatgatcagcaaacatctcggt
gatgagtcgccgtttctgaaagtcgataaacagcacattgtgaatccggatatccggcat
ctgctgattcgttgcaaagagggggaaaagctggagcagatcctcgactttctgaaggag
cgcggccagcagcagggggtgattttctgccgtacgcggcaggatacgattgatttcggt
caatcgctcgaaaaggcgggcatcactcatgccgtgctgcacggtgatctgatgcagagc
gagcgcgacaagattatgcggatgttcaaaaaggggcgcgtgcgcctgctggtttcgacc
gatgtatcggcgcgcggcatcgatgtggataatctctcttttgtgatccatcatcagctg
ccggaaaaaaatgaatattacacgcaccgcagcggccgcaccggccgggcgggcaaatcg
ggcatttcgctggtgctgataactccgagtgatgaaaagcgcatcatcaaacttgcgcgg
gatttgaagattcagttccgggaaattgcctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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