KEGG   Vibrio cholerae O1 2010EL-1786: Vch1786_I1944
Entry
Vch1786_I1944     CDS       T01650                                 
Symbol
rumA
Name
(GenBank) 23S rRNA 5-methyluridine methyltransferase
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
vce  Vibrio cholerae O1 2010EL-1786
Brite
KEGG Orthology (KO) [BR:vce00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vce03009]
    Vch1786_I1944 (rumA)
Enzymes [BR:vce01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     Vch1786_I1944 (rumA)
Ribosome biogenesis [BR:vce03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    Vch1786_I1944 (rumA)
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 TRAM Methyltransf_25 Met_10 PCMT RrnaAD Methyltransf_15 MTS Cons_hypoth95 Methyltransf_11 PrmA Methyltransf_4 Methyltransf_23 FtsJ Ubie_methyltran Methyltransf_32 DOT1 TPMT Methyltransf_12 Methyltr_RsmB-F
Other DBs
NCBI-ProteinID: AET27536
Position
1:complement(2103258..2104580)
AA seq 440 aa
MARFFQPKKHSTLDTKHQPVTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKS
KYARGQLIKVLKPSAERVAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQS
LALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALL
PDLNALLSEWSQPERLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLM
LEAGELQHVQGEAPYCEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDL
FCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWA
QQKFAKVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGM
LDMFPHTSHLESMALFVKKG
NT seq 1323 nt   +upstreamnt  +downstreamnt
atggcacgtttctttcaaccgaaaaagcacagcacgttagacacaaagcatcagccggtc
actattgaacggttggatcaccaaggcagcggactggcctttttacacaagaaacccttg
tttgttgacggcgctttgccgggggaagaggtgctgattcagctcactgaaaacaagagc
aaatacgcgcgcggtcaactgattaaagtgttgaaacccagcgctgagcgtgttgcacct
ttttgtgcgcattatgcgcaatgtggtggttgcgatttacagcatcttgaccgagcggga
caaatccatcacaagcagcaagccttaagtcaattaatggtgaagtttgcagggcagagt
cttgctctgtctgcgccagtttgttctgatgatcaaggctaccgtcgtcgcgcacgctta
agcctgatgtgggataagaaaactcagcaactacaattgggttttcgccgcaagcagagc
aaagcgatagttaatgtgacccattgccccgtgctggagccgagtttaaatgcgctattg
cctgatttgaacgctttgttgagtgagtggagtcaacctgagcggttggggcatgtcgaa
ttggtgaaaggggataacactcgcgtgttggtgctgcgccatttaggcgcgctgattgaa
caagatcagcagcgtttgactgactttgcttcgcaaaaccaactaaccttatatctgatg
ctggaagcaggcgagttgcaacatgtgcaaggtgaagcgccatactgtgaagaaacaggc
agccgcttaagtttcttgcccagccattttattcaggtcaatcgcgcggtgaatcagcac
atggtcgtgcaggccttgaattggcttgaggttagcccacaagaacgcgtgctcgatctc
ttctgtggcttaggaaatttcacgctgccgctggccaaacaagcgcaagcggtggtgggt
gttgaaggtgttgatgagatggtgcaacacgccactcataacgcgaaattgaaccaaatc
aataatgtggcgttttatcaggccaatttggaacaagatatgacgagcgcctcatgggcg
cagcagaaatttgctaaagtactgctcgacccagcccgcgcaggcgcagaagggattgtg
gatcaactctctgcgttaggtgccaagcgggttgtgtacgtgtcgtgtaaccctgcgaca
ttagcacgagacagtcaaagcttgctgagccaaggatttcgcttagagaaactggggatg
ctcgatatgttcccgcacaccagtcatctcgagtccatggctttgtttgtgaaaaagggc
tag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (21)   
   Pfam (21)   
All databases (29)   

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