KEGG T03827: IR04

Vibrio cholerae O1 El Tor FJ147: IR04_14755

Entry

IR04_14755        CDS       T03827

Name

(GenBank) transcriptional regulator HU subunit alpha

K03530

DNA-binding protein HU-beta

Organism

vcf Vibrio cholerae O1 El Tor FJ147

Brite

KEGG Orthology (KO) [BR:vcf00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vcf03032]
    IR04_14755
   03036 Chromosome and associated proteins [BR:vcf03036]
    IR04_14755
   03400 DNA repair and recombination proteins [BR:vcf03400]
    IR04_14755
DNA replication proteins [BR:vcf03032]
Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    IR04_14755
Chromosome and associated proteins [BR:vcf03036]
Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    IR04_14755
DNA repair and recombination proteins [BR:vcf03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      IR04_14755

SSDB

Motif

Pfam:

Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 HU-CCDC81_euk_2 ACP_syn_III_C Arteri_nsp7a GTP_EFTU_D2 VWA_2 HU-CCDC81_euk_1 Nup214_FG

Other DBs

NCBI-ProteinID:

AKA00368

Position

I:complement(2152198..2152470)

AA seq 90 aa
MNKTQLVEQIAANADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG
RNPKTGEEIKIAEAKVPSFKAGKALKDACN

NT seq 273 nt +upstreamnt +downstreamnt
gtgaataagacacaactagtagaacaaattgcagcgaacgcagatatctctaaagcctct
gcaggtcgcgctcttgacgcattcatcgaagcagtcagcggcacactacaatcaggtgac
caagtggcactggttggttttggtacgttcagcgtacgtactcgcgcagcgcgtactggt
cgtaacccaaaaactggcgaagagatcaaaatcgctgaagcgaaagtgccttcattcaaa
gcaggtaaagctctgaaagacgcttgcaactaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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