KEGG   Vibrio cholerae O1 El Tor FJ147: IR04_18715
Entry
IR04_18715        CDS       T03827                                 
Name
(GenBank) general secretion pathway protein GspD
  KO
K02453  general secretion pathway protein D
Organism
vcf  Vibrio cholerae O1 El Tor FJ147
Pathway
vcf03070  Bacterial secretion system
vcf05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vcf00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    IR04_18715
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    IR04_18715
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vcf02044]
    IR04_18715
Secretion system [BR:vcf02044]
 Type II secretion system
  General secretion pathway protein
   IR04_18715
SSDB
Motif
Pfam: Secretin Secretin_N type_II_gspD_N0
Other DBs
NCBI-ProteinID: AKA01113
Position
I:complement(2989793..2991817)
AA seq 674 aa
MKYWLKKSSWLLAGSLLSTPLAMANEFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGK
VDVRSFDTLNEEQYYSFFLSVLEVYGFAVVEMDNGVLKVIKSKDAKTSAIPVLSGEERAN
GDEVITQVVAVKNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEII
RRVDQAGDKEIEVVELNNASAAEMVRIVEALNKTTDAQNTPEFLKPKFVADERTNSILIS
GDPKVRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPT
TSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGIN
LGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGD
YTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEV
PVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVLGANGAVDV
RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKN
LMVFIKPTIIRDGVTADGITQRKYNYIRAEQLFRAEKGLRLLDDASVPVLPKFGDDRRHS
PEIQAFIEQMEAKQ
NT seq 2025 nt   +upstreamnt  +downstreamnt
gtgaaatattggctgaaaaaaagttcatggctgttggcgggcagtttgctgtctacccct
ctagcgatggcaaacgagtttagcgccagctttaaaggcaccgacattcaagaatttatc
aatattgtgggacgcaatcttgagaaaaccatcattgtcgacccttcggtacgcggcaaa
gtcgatgtgcgcagttttgataccttaaacgaagagcaatattacagtttcttcctcagt
gtgctcgaagtgtacggtttcgccgtcgttgaaatggataatggcgtactgaaagtcatc
aaatcgaaagatgcaaagacctcagccattccggtgttgagtggtgaagagcgcgccaat
ggcgatgaagtcattacccaagtggtcgcggtgaaaaacgtttccgtacgcgagttgtcc
cctttgctgcgccaactgattgataacgcaggggcgggaaacgtagtgcactacgatccg
gcgaacatcattttgatcacggggcgagctgcggtagtgaaccgtttagcggaaattatt
cgtcgcgttgaccaagccggtgacaaagagattgaagtggttgagcttaataatgcatcg
gcagctgaaatggtgcggattgttgaagcgctcaacaaaacgacagacgcgcaaaacacc
cctgaattcttaaagcccaagtttgtggcagacgagcgtaccaactcgattttgatttct
ggcgatcctaaagtgcgcgagcgcctcaagcgtctgatcaagcagttggatgttgagatg
gcggccaaaggcaataaccgcgtggtgtatttgaaatacgccaaagctgaagatctggtc
gaagtactgaaaggggtgtctgagaacctgcaagcggaaaaaggcaccggacagccgacc
acttcaaaacgtaatgaagtgatgattgccgcgcacgctgacaccaactcgttagtgctt
actgcgccgcaagacattatgaatgcgatgctggaagtgattggacagctagatattcgc
cgtgcgcaagtgttgattgaagcgctgattgtcgaaatggcagagggcgatgggatcaac
cttggtgtgcagtggggctcgctggaaagtggttcagttatccaatatggcaacactggc
gcgtcgattggcaatgtgatgattggtcttgaagaagccaaagacacaacccaaaccaaa
gcggtttatgatactaataacaacttcttgagaaatgaaacgacgaccaccaaaggggat
tacaccaagttagcctctgcattgtcgagcattcaaggtgctgcagtcagcatcgcgatg
ggcgactggacggccttaatcaacgcggtctctaatgattccagctcgaatatcctgtca
tcacccagcattacggtgatggataacggtgaagcctcctttatcgtgggtgaagaagtg
ccggttatcacaggttctactgcaggctctaataacgacaacccattccaaaccgtggat
cgtaaagaagtcggtatcaagcttaaagtggtgccgcagatcaacgaaggtaactcagtc
cagctcaatattgagcaagaagtctcgaacgtgttgggcgccaatggagcggtagacgtg
cgttttgcgaagcgtcagctcaacacttctgtgatggtgcaagatgggcagatgttggtg
ctcggcggtttgattgatgagcgagctcttgagagtgagtcgaaagtcccgctcttgggg
gatattcctctgctgggtcaactgttccgctcaaccagctcgcaagtggaaaagaaaaac
ctgatggtgtttatcaagccgaccattattcgtgatggcgtgacggccgatggcatcacc
caacgtaaatacaactacatccgcgccgagcaactgttccgcgccgaaaaaggtttacgt
ctgctggatgatgctagcgtgcctgtgttgccgaaatttggcgatgaccgccgccattca
cctgaaattcaagcctttattgagcagatggaagccaagcaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (50)   
   KEGG ORTHOLOGY (1)   
   RefGene (47)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (58)   

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