KEGG   Vibrio cholerae O1 IEC224: O3Y_01515
Entry
O3Y_01515         CDS       T01766                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
vci  Vibrio cholerae O1 IEC224
Pathway
vci03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vci00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    O3Y_01515
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vci03021]
    O3Y_01515
   03400 DNA repair and recombination proteins [BR:vci03400]
    O3Y_01515
Enzymes [BR:vci01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     O3Y_01515
Transcription machinery [BR:vci03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     O3Y_01515
DNA repair and recombination proteins [BR:vci03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      O3Y_01515
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Peptidase_M23 Apocytochr_F_C
Other DBs
NCBI-ProteinID: AFC57190
Position
I:344515..348720
AA seq 1401 aa
MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK
TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE
VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELAL
GRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKL
HNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVANW
EAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL
VDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVFEG
ERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQQGPS
AEQATDNLAALLNAGFSSDDE
NT seq 4206 nt   +upstreamnt  +downstreamnt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcgatc
aaaatcggtctggcttcaccagacatgatccgttcatggtcttttggtgaagtgaaaaaa
cctgaaaccatcaactatcgtacgttcaagcctgagcgtgatggtctgttctgtgcgcgt
atttttggcccggtaaaagactacgaatgtctttgtggcaaatataagcgtctgaaacac
cgtggtgtgatttgtgagaagtgtggcgttgaagtcacccaaactaaagttcgtcgtgac
cgtatgggccacatcgaactggcttctccagttgcgcacatctggttcctgaagtctctg
ccatctcgtatcggtctactgatggacatgcctctgcgtgacatcgaacgcgtactttac
tttgaaatgtacgtagtgactgagccaggcatgactgaccttgaacgtggtcaaatgctg
actgaggaagagtacctcgaccgtttggaagagtggggcgatgagttcaccgcgaaaatg
ggtgctgaagcgatcaaagatctgctggcatcgatggatctgcctgcagaagcagagcag
atgcgcgaagagctggataccactaactctgaaaccaaacgtaagaaactgactaagcgt
ctgaagctggttgaagcgttcgtcgcatcaggtaacaaacctgaatggatgatcctgact
gtactaccagttctgccgcctgatctacgtccattggttccactggatggcggtcgtttc
gcaacgtcggatctgaacgatctgtaccgtcgcgtcatcaaccgtaacaaccgtttgaag
cgtctgcttgaactggcggcaccagacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgtggatgcgctgctggataacggccgtcgtggtcgtgcgatcacgggctcgaac
aagcgtccgctgaagtctctggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacctgctgggtaaacgtgttgactactcaggccgttcggttatcaccgtaggtccatac
ctgcgtctgcaccagtgtggtctaccgaagaaaatggctcttgagctgttcaaaccattc
atctacagcaagctggaaactcgtggcctagcaacgacgatcaaagccgctaagaaaatg
gttgagcgcgaagaagcggtcgtatgggatatcttggatgaagtgatccgcgaacaccca
gtgctgctgaaccgtgcaccaacacttcaccgtttgggtatccaagcgtttgaaccggtc
ctgatcgaaggtaaagcgatccaactgcacccactagtgtgtgcggcgtataacgcggac
ttcgacggtgaccaaatggcggtacacgttcctctgacgcttgaagcgcagttggaagct
cgtaccctgatgatgtcaaccaacaacattctgtcgccagcgtcaggtgatccaatcatc
gtaccgtctcaggacgtggtactgggtctgtactacatgacccgtgaaaagatcaatgcg
aaaggcgaaggtatgtacctgactggtcctgctgaggctgagaaggcgtaccgtactaag
actgctgagctgcacgctcgcgttaaagtacgtattaccgaaaccatcaagcatgaaaac
ggtaagctgaccactgaaaccaagatgattgacacgaccgttggccgtgccatgttgtgg
caaatcgtaccgaaaggtctgccatacagcttggtgaaccagaagttaggtaagaagcaa
atttctaacctgctcaacgaggcataccgtaagctgggtctgaaagacaccgttatcttc
gctgaccaaatcatgtacaccggtttcgcttacgcggcactgtctggtgtatcggttggt
atcgacgatatggtagttccagcggctaagtacacggaaattgctgaagcggaagaagaa
gtacgcgaaattcaagagcagttccagtctggtctggtgaccgctggcgaacgctacaac
aaagtgatcgacatttgggcatcaaccaacgatcgcgtagcgaaagcgatgatggaaaac
ctctcttctgagcaggtgattaaccgtcaaggcgaacaagaaaaacaagagtcgttcaac
agcatctatatgatggccgactcaggtgctcgtggttctgctgctcagatccgtcagttg
gcgggtatgcgtggtctgatggcgcgtccagatggctcgatcatcgaaacgccaatcacg
gcaaactttaaagaaggtctaaacgttcttcagtactttatctcaacgcacggtgctcgt
aagggtctggcggatacggcactgaaaacagcgaactccggttacctgactcgtcgtctg
gtagacgtagcgcaagacgttgtggtgactgaacatgactgtggcaccctagaaggcgtg
gtgatgacaccgcacatcgaaggtggtgacgttaaagtcgcactgactgaactggcactg
ggccgtgtggtatcagaagatatcctcaagccaggtacagatgaagtgttgatccctcgt
aatacactgctggatgaaaagtggtgtaaggtgatcaacgataactctgttgaccaaatc
aaagtacgttcagtggtaacttgtgattctgacttcggttgttgtgcgcagtgttacggt
cgtgacctagcacgtggtcacttggtgaaccaaggtgaagcggtcggtgttatagcggca
cagtcaatcggtgagccaggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcaacagcagcagcagaaaacagcatccaagctaagaacaacggttctgtgaaactg
cacaatgcgaagttcgtaaccaataaagatggcaagctcgttatcacctctcgtgcttct
gagctgaccatcattgacgaatttggtcgtaccaaagagaaacacaaactgccatacggc
tctatgctgagcaaagccgatggtgatgcagtggctgcgggcgaaaccgtagcgaactgg
gaagcgcataccatgccaatcatcactgaagtggcaggtcgcgtacagtttgtggatatg
atcgatggcgtaaccgtttctcgtcaaacggacgatctgactggtctgtcttcaagtgaa
gtgactgaagccgcagcgcgtcctgcagcaggtaaagacatgcgtccagccattaaactg
gttgacgcaaatggtaaagatgtcctgatcccaggtactgacatgccagctcaatacttc
ctgccaggtaaagcgattgtgaacttggacgacggtgctgaagtgaatgtgggtgataca
ctggctcgtattcctcagaagtctggcggtaacaaggacatcaccggtggtctaccacgc
gttgctgacctgtttgaagcgcgtaagccaaaagagcctgcgattctggctgagcactca
ggtaccgtatcgttcggtaaagagactaaaggtaagcgtcgtttgatcatcactcgtgac
agcggtgacacttacgaagagatgatccctaaacatcgtcaattgaacgtgtttgaaggt
gagcgcattgagcgtggtgatgtgattgcggacggcccagagtcgccacatgacatcctg
cgtctgcgtgggatccatgcagtgaccacttacatcgcgaacgaggttcaggaagtttac
cgtctacaaggcgttaagattaacgataagcacatcgagactatcgttcgtcaaatgctg
cgtaagtgtacgatcaccttcgcgggtgactcagagttcttgcctggcgagacagttgag
tactcacaagtgaagatcgcgaaccgtaaactggttgaagaaggcaaagagccagctcgt
ttcgagcgtgagttgttgggtattaccaaagcatctctggcgactgagtctttcatctca
gcagcatcgttccaagaaaccactcgcgttctaacggaagcagcggtatctggtaagcgt
gacgatctgcgcggtctgaaagagaacgtgatcgttggccgtctgatcccggctggtaca
ggttttgcgtaccaccaagatcgtcaagccaaacgtgcacaagaacagcaaggtccatcg
gctgaacaagccactgacaacctcgctgcactgttgaatgcaggtttctcttctgacgac
gagtaa

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