KEGG   Vibrio cholerae O1 IEC224: O3Y_13080
Entry
O3Y_13080         CDS       T01766                                 
Name
(GenBank) general secretion pathway protein D
  KO
K02453  general secretion pathway protein D
Organism
vci  Vibrio cholerae O1 IEC224
Pathway
vci03070  Bacterial secretion system
vci05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vci00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    O3Y_13080
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    O3Y_13080
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vci02044]
    O3Y_13080
Secretion system [BR:vci02044]
 Type II secretion system
  General secretion pathway protein
   O3Y_13080
SSDB
Motif
Pfam: Secretin Secretin_N type_II_gspD_N0
Other DBs
NCBI-ProteinID: AFC59486
Position
I:complement(2951477..2953501)
AA seq 674 aa
MKYWLKKSSWLLAGSLLSTPLAMANEFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGK
VDVRSFDTLNEEQYYSFFLSVLEVYGFAVVEMDNGVLKVIKSKDAKTSAIPVLSGEERAN
GDEVITQVVAVKNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEII
RRVDQAGDKEIEVVELNNASAAEMVRIVEALNKTTDAQNTPEFLKPKFVADERTNSILIS
GDPKVRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPT
TSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGIN
LGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGD
YTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEV
PVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVLGANGAVDV
RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKN
LMVFIKPTIIRDGVTADGITQRKYNYIRAEQLFRAEKGLRLLDDASVPVLPKFGDDRRHS
PEIQAFIEQMEAKQ
NT seq 2025 nt   +upstreamnt  +downstreamnt
gtgaaatattggctgaaaaaaagttcatggctgttggcgggcagtttgctgtctacccct
ctagcgatggcaaacgagtttagcgccagctttaaaggcaccgacattcaagaatttatc
aatattgtgggacgcaatcttgagaaaaccatcattgtcgacccttcggtacgcggcaaa
gtcgatgtgcgcagttttgataccttaaacgaagagcaatattacagtttcttcctcagt
gtgctcgaagtgtacggtttcgccgtcgttgaaatggataatggcgtactgaaagtcatc
aaatcgaaagatgcaaagacctcagccattccggtgttgagtggtgaagagcgcgccaat
ggcgatgaagtcattacccaagtggtcgcggtgaaaaacgtttccgtacgcgagttgtcc
cctttgctgcgccaactgattgataacgcaggggcggggaacgtagtgcactacgatccg
gcgaacatcattttgatcacggggcgagctgcggtagtgaaccgtttagcggaaattatt
cgtcgcgttgaccaagccggtgacaaagagattgaagtggttgagcttaataatgcatcg
gcagctgaaatggtgcggattgttgaagcgctcaacaaaacgacagacgcgcaaaacacc
cctgaattcttaaagcccaagtttgtggcagacgagcgtaccaactcgattttgatttct
ggcgatcctaaagtgcgcgagcgcctcaagcgtctgatcaagcagttggatgttgagatg
gcggccaaaggcaataaccgcgtggtgtatttgaaatacgccaaagctgaagatctggtc
gaagtactgaaaggggtgtctgagaacctgcaagcggaaaaaggcaccggacagccgacc
acttcaaaacgtaatgaagtgatgattgccgcgcacgctgacaccaactcgttagtgctt
actgcgccgcaagacattatgaatgcgatgctggaagtgattggacagctagatattcgc
cgtgcgcaagtgttgattgaagcgctgattgtcgaaatggcagagggcgatgggatcaac
cttggtgtgcagtggggctcgctggaaagtggttcagttatccaatatggcaacactggc
gcgtcgattggcaatgtgatgattggtcttgaagaagccaaagacacaacccaaaccaaa
gcggtttatgatactaataacaacttcttgagaaatgaaacgacgaccaccaaaggggat
tacaccaagttagcctctgcattgtcgagcattcaaggtgctgcagtcagcatcgcgatg
ggcgactggacggccttaatcaacgcggtctctaatgattccagctcgaatatcctgtca
tcacccagcattacggtgatggataacggtgaagcctcctttatcgtgggtgaagaagtg
ccggttatcacaggttctactgcaggctctaataacgacaacccattccaaaccgtggat
cgtaaagaagtcggtatcaagcttaaagtggtgccgcagatcaacgaaggtaactcagtc
cagctcaatattgagcaagaagtctcgaacgtgttgggcgccaatggagcggtagacgtg
cgttttgcgaagcgtcagctcaacacttctgtgatggtgcaagatgggcagatgttggtg
ctcggcggtttgattgatgagcgagctcttgagagtgagtcgaaagtcccgctcttgggg
gatattcctctgctgggtcaactgttccgctcaaccagctcgcaagtggaaaagaaaaac
ctgatggtgtttatcaagccgaccattattcgtgatggcgtgacggccgatggcatcacc
caacgtaaatacaactacatccgcgccgagcaactgttccgcgccgaaaaaggtttacgt
ctgctggatgatgctagcgtgcctgtgttgccgaaatttggcgatgaccgccgccattca
cctgaaattcaagcctttattgagcagatggaagccaagcaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

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