KEGG   Vibrio cholerae O1 MJ-1236: VCD_001658
Entry
VCD_001658        CDS       T00903                                 
Name
(GenBank) DNA-directed RNA polymerase omega subunit
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
vcj  Vibrio cholerae O1 MJ-1236
Pathway
vcj03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vcj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    VCD_001658
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vcj03021]
    VCD_001658
   03400 DNA repair and recombination proteins [BR:vcj03400]
    VCD_001658
Enzymes [BR:vcj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     VCD_001658
Transcription machinery [BR:vcj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     VCD_001658
DNA repair and recombination proteins [BR:vcj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      VCD_001658
SSDB
Motif
Pfam: RNA_pol_Rpb6 AmiR_N
Other DBs
NCBI-ProteinID: ACQ59827
Position
1:complement(713718..713990)
AA seq 90 aa
MARVTVQDAVEKIGNRFDLVLVAARRARQMQSGGKDALVPEENDKPTVIALREIEEGLIT
KDVLDARERQEQQEQEAAELAAVSSIMHNR
NT seq 273 nt   +upstreamnt  +downstreamnt
atggcacgcgtaacagttcaagacgctgttgaaaaaattggcaaccgtttcgacttagtt
ctggttgcggctcgccgcgctcgtcaaatgcaatctggcggtaaagatgcattggtgccg
gaagagaacgataagccaacggttatcgctctgcgcgaaatcgaagaagggctgatcacg
aaagatgtgctggatgcgcgtgagcgtcaagagcagcaagaacaagaagcggcagagctg
gctgcagttagcagcatcatgcacaaccgttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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