KEGG   Vibrio cholerae O1 M66-2: VCM66_1838
Entry
VCM66_1838        CDS       T00891                                 
Symbol
hipB
Name
(GenBank) integration host factor, beta subunit
  KO
K05788  integration host factor subunit beta
Organism
vcm  Vibrio cholerae O1 M66-2
Brite
KEGG Orthology (KO) [BR:vcm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vcm03032]
    VCM66_1838 (hipB)
   03036 Chromosome and associated proteins [BR:vcm03036]
    VCM66_1838 (hipB)
   03400 DNA repair and recombination proteins [BR:vcm03400]
    VCM66_1838 (hipB)
DNA replication proteins [BR:vcm03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    VCM66_1838 (hipB)
Chromosome and associated proteins [BR:vcm03036]
 Prokaryotic type
  Nucleoid associated proteins
   IHF (integration host factor)
    VCM66_1838 (hipB)
DNA repair and recombination proteins [BR:vcm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Facilitator
      VCM66_1838 (hipB)
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 HU-CCDC81_euk_1 HU-DNA_bdg DUF4777 HU-CCDC81_euk_2 Glycos_trans_3N Ybfg_C
Other DBs
NCBI-ProteinID: ACP06144
UniProt: C3LNL8
Position
I:complement(2000265..2000543)
AA seq 92 aa
MTKSELIERLCAEQTHLSAKEIEDAVKNILEHMASTLEAGERIEIRGFGSFSLHYREPRV
GRNPKTGDKVELEGKYVPHFKPGKELRERVNL
NT seq 279 nt   +upstreamnt  +downstreamnt
atgactaagtccgaactgatagaaagactctgtgccgaacaaacgcacttgtctgcgaaa
gagatcgaagatgcggtaaaaaatatccttgagcatatggcctcaacgttagaagcgggg
gagcgcatcgagattcgtggtttcggtagcttttccttacactatcgtgagccgcgtgta
gggcgtaatcctaagactggcgataaggtggagttggaaggtaagtacgttccgcatttc
aaaccaggtaaggaactacgcgaacgcgttaacttgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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