KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_103709
Entry
VOLCADRAFT_103709 CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K03026  DNA-directed RNA polymerase III subunit RPC4
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    VOLCADRAFT_103709
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vcn03021]
    VOLCADRAFT_103709
Transcription machinery [BR:vcn03021]
 Eukaryotic type
  RNA polymerase III system
   RNA polymerase III
    Pol III specific subunits
     VOLCADRAFT_103709
SSDB
Motif
Pfam: RNA_pol_Rpc4 PPR_3 DUF3368
Other DBs
NCBI-GeneID: 9621272
NCBI-ProteinID: XP_002947935
JGI: 103709
UniProt: D8TNY5
Position
Unknown
AA seq 2192 aa
MADKDAAASTGRGGGRAGARKFMPTMPGRRKKAEEGGAAAAGDAGVSDEAFKDLIKQAQS
AATGGRGRGRGRHQQQRFLVTFGVGGEERPALAAAKHYARSGGAGGGGGGAGGGGAGGGG
GSGNRVKTEGAGADEEPLPDLPDAKPADVKSIKPRPAVLDYTQYYPTMLPLRVPGEEIWE
EAEGGPGFLPSALDLAGMPDVPQRPGEDLDLFDPEMEDQMFLMQMPAVLPLQPGRGGGAA
AAGEAEGGGGGGGGGGAAGPGPSSERRRKEAAAAAANRAPGCNMRELPSGRIGKLLVFRS
GKVQMQVGDVLLDVSIGLPNQHRQDVVALNPSSNACVLLGDVTQRVLVSPDVLQLLREDS
VPEFRRAPEELPDLTRAHRKARGYDDIQQQPDGAPGDVAGIKIKTEASSKGSISAEPINV
LARAAVPSLPSTGQQHPARPHPSQPPQYSYASPLRPMPPPHTSFRPTCKAAPPLSPLTRA
LHLPWRPLPSACLRDLGDRDVPLRAAGGAADGGEAAEGDKPRKGRRSRKEREKEEARDLL
ESQQIDMEVLEEFKARAAAEEEARRATMGDASEDDPRRLNFHRSLLAASQRGLTAECARI
IEAMSDAGLAPGPRAIHVWAYSYIQIGDGPGAKRTAEAGREAYGISWIPETYVALMHGAL
SATPGGPDLLGALQLWVAQQDAGANPQLGFTFLTKELFRMRYSALAMQVVSEGYAAGLQP
DEKLAALVIEQLCKQGLMEEARAEMQRLLDAGLLVGPDHYDTIVRLEAARGNLGSAREML
QNFYTDQRFAPPRASSYTALLKGLVSALRPSGGSSPPTGPPGEDEEQPGESGSGGGGGGR
LVLEPDQLDQLLTALREEMVARGLRPGRDTYAAMVEAFAVVGDLDSALAAYETMNRAKGT
PALLRKKYLGQFMSRREVDGVVLGMGGCVVTEEGLWVPPAKMTLGEMRVELTAGGMEASA
AAGLARKELQKLIKERRERLPSNLLEMQARLEATVAAQEEAEEERRAAEMEENVYEGEEE
YDDDEPDMDTLDVNIASIIADEGTFEGGDSLEESATFLAAAGGKLVLTEEAGRAERAGAE
GDGEEDEHDDVRDRDDDLDEEDDMEEGFAEDTPAAASRKRRQRRRRGAAAAAAAVDDDDI
ADLDLEDEDEEYDDGDVDDDDEELLGLEDDGSPPLGDGLGPASSAAPEDLDWEVERGGGE
EGEDDAIILDQLLSMSVMDSSRYNDTAGMVVAMRMLELWVAVGCSPTPPDLMMLYEGATL
EEHPRCCADLAEQLPALLVAGEVSREQLSEMLVTLANVCLRPGSADSEAADRVVTVMEDN
KLQVPADVYSGLEAALGGRPRMRDSVLGVAGGRLEDTDMDLTGSGLESSVSVVGDEEDEG
EGGEGVLEGVLGAGEGEEEEEEEEGGAEEEGEGEEEELELYGEYEEDPAQLEAEQLELQR
LFQQDGEEDDAWLDELDDTTDLEEVRAAAEAEAEAARQAEMVAATLESVRARNPLAAALL
ERQLAAMQQAAEALAEAEAADEAEGEEEGQLPAEAGTEAGAGGIVPYGAGGMDGAEGWEA
EEDAEEGGEGEEEEGGDLADLGAMAMEAEWDASAVLELPPVVLAEAAAATEADLDETGGL
EEEDRILLRRIASKARVLAQLSALNDMAAQAHPDGAAAADAEVTEALRRVRQAMAEGAAA
TSIIAAAAAAAGETPASLAAAAADEAGLDAVGLELEEAEEAEEGEGEDVLLPEHLEPGVD
EEALDGPAKELLHSVMAEAEAILAAEEAEEEAEAEEEDGGAGEAEWEEEEEEGAEFDGLT
VGAEETAADAAMLRRLLEAADQLGPELNEEQQELYDMLERGDTSSLESKVGPEVMSWLAE
DLQRLAAQEEVELQEGPMGGLAEQQQQQPQQGEEEEEEELGDGVPELPLGWRLNDRFMDT
FAAVLRERAAAAAERGIADDGPEVAAVDALLAMAYGYRPQGAADLQEEEEEEDRWQGEGE
EVDEELETVQREAREALQALAKEMGGPGEAAAREAAERALEEVMAVQTERYEEAKAEEEA
GPRVQVPLPATAAAAAAAALAAGGLEEGPADWEEEGEGEEEEGEERGGAGSGFKVSEAVP
PEVAAALLQSLRPVAGPVYFGAQQRQQREEEEEEEEEDGGLVGTSTAAVAEMAPQAEEEE
EEAEEEEPPVRGKGRGRSGSGPGSARARRGFR
NT seq 6579 nt   +upstreamnt  +downstreamnt
atggcggacaaggatgccgccgcgtctactggacgcggcggcgggagggcgggcgcgcga
aagttcatgcccaccatgcccggtcggcgcaagaaggccgaggaggggggcgccgccgcc
gctggcgacgcgggtgtaagcgatgaggcattcaaggacctgatcaagcaggcgcagtcg
gcggcaacggggggacgcgggcgcggacgtgggcggcaccagcagcagcgcttcctggtt
actttcggtgtgggcggcgaggaaagacctgccctggcggcagccaagcattacgctcgc
agcggtggagcgggtggcggcggcggtggagcgggtggcggtggagcgggtggcggcggc
gggagcggcaatcgcgtcaagaccgagggtgctggcgccgacgaggagccccttcctgac
cttcccgacgcaaagcccgcggacgtcaagtccatcaagccgcgacctgccgtacttgac
tacacgcagtactaccccacgatgctgccgctgcgtgtgcccggggaggaaatctgggag
gaggcggagggcgggccgggcttcctgcccagcgcacttgacttggcggggatgccggat
gtaccgcagcgacccggggaagatttggatctgtttgatccggagatggaggaccagatg
tttctgatgcagatgccggcagtgctgccgctgcagcccgggagaggcgggggtgcggcg
gccgcaggcgaagccgaaggcggtggaggaggaggagggggagggggagcagcgggtcct
gggccgagcagcgaacggcggcgaaaggaggcggcggcagcagcagccaaccgcgctccc
ggctgtaacatgcgggagctgccctcgggccgcatcggcaagctgcttgtgttccgcagt
ggcaaggtgcagatgcaagtgggggacgtgctgctggacgtcagtataggactgcctaat
cagcaccgccaagatgtcgtggccctcaaccccagcagcaacgcctgtgtgctgctgggc
gatgtgacccagcgtgtgctggtgtccccggacgtgttgcagctgctgcgggaggactcg
gtgccggagttccgcagggcgcccgaggagctgcccgacctcaccagagcgcaccgcaag
gcgaggggctacgacgatatccagcagcagccagacggagcaccgggcgatgtggccggc
ataaagattaagaccgaggcgagctcgaaaggatcaatcagcgcagagcccatcaacgtc
cttgccagagcagccgtgccctccttaccatctaccggacagcagcacccagcacgacct
catcccagccagccaccccaatacagctacgccagcccgttgcgcccaatgccaccaccg
cacacttccttccgccccacctgtaaagctgcgcctcctctttcccccctcacccgcgcc
ctccacctcccctggcggccccttccatctgcctgcctacgtgacttgggtgaccgtgat
gtcccgttgcgggctgcgggaggtgcagctgacggcggggaggcggcggagggtgataag
ccccgcaagggccgccgcagccgcaaggagcgagagaaggaggaggctagggacctcctg
gagagccagcagatcgacatggaggttctggaggagttcaaggcccgggcagctgcggag
gaggaggcgcgcagggcgaccatgggggatgcaagcgaggatgacccgcggcggctcaac
ttccacaggtcgctgttggccgcctcccagcgcggtctcacagctgagtgcgcccgcatc
attgaggccatgtccgatgcggggctggccccgggtccccgggccatacacgtgtgggcc
tactcgtacattcagattggggacggacccggagccaagaggactgcagaggcgggcagg
gaggcgtacggcatctcctggattcctgagacctacgtggcgctgatgcacggcgcactg
agtgccacccccgggggccccgacctgctgggggcgctgcagctgtgggtggcgcagcag
gacgcgggggcaaacccccagttgggcttcacattcctgaccaaggagctgttcaggatg
aggtacagcgcgctggctatgcaggtggtttcggagggctacgccgccggattgcagccc
gacgagaagctggcggccctggtgattgaacagctgtgcaagcagggccttatggaggag
gcccgtgccgagatgcagcggctgctcgacgccgggctgctagtggggcccgaccattac
gacaccattgtacgactggaggcagctcgcgggaacctggggtccgccagggagatgctg
cagaacttctacacagaccagcggttcgcccccccacgtgcctcgtcgtacacagcgctc
ctgaagggccttgtgtcggctctacgaccatctggcggctcctccccccccactgggccc
ccgggtgaggatgaagaacaacccggggagtccggcagtggcggcggcggtggagggcgg
ttggttctggagcccgaccagctggaccaactgctaacggctctgagggaggagatggtc
gcgagggggttgcggcccggaagggatacctacgccgccatggttgaggcgttcgccgtg
gtgggggatctggacagcgccctagccgcctatgagactatgaaccgggccaagggtacc
cccgcgctgctcaggaagaagtacctgggccaatttatgagtcgccgcgaggtggacgga
gtggttctgggtatgggcggctgtgtggtgacggaggagggtctgtgggtgccccccgcc
aagatgacgctgggggagatgcgggtggagctcacggcgggggggatggaggcctcggca
gctgcggggctggcgaggaaggagctgcagaagctgatcaaggagcgccgcgagcggctt
cccagcaacctcttggagatgcaggctcggttggaggcgacggtggcggctcaggaggag
gcggaggaggagcggcgggctgcggagatggaggagaatgtgtacgagggcgaggaggag
tacgacgatgacgagccggatatggacacactggatgtgaacatcgccagcatcatcgcg
gacgagggcaccttcgagggcggcgactccctggaggagagcgccacgttcctggcggcg
gcggggggcaagctcgtgctgacggaggaggcagggagggcggaacgtgctggtgcggag
ggggacggagaggaggacgagcatgatgacgtaagagacagggacgatgaccttgacgag
gaggatgatatggaggagggcttcgcggaggatacgccagcggcggcgtcaaggaagcgc
cgccagcggcgccgccgcggcgctgctgccgccgccgccgccgtcgacgatgacgatatc
gcggatttggacctggaggacgaagatgaggagtacgacgacggtgatgttgatgacgac
gacgaggagttgttgggtttggaggatgacggatccccccccctgggtgatggtctgggt
cccgcctcctccgctgcccccgaggacctggactgggaggtggagcggggtggtggtgag
gagggggaggacgatgcgatcatcctggaccagctgctgagtatgtccgtcatggactcg
tcgcggtacaacgacacggcgggcatggttgttgccatgcgcatgctggagttgtgggtg
gctgtgggttgctcccccacccctcccgacctgatgatgctgtacgagggagccaccctc
gaggagcacccccgctgctgtgcggacctggcggagcagctacccgcactgctggtggcg
ggggaggtcagccgggaacagttatccgagatgttggtcaccctggccaacgtctgtctg
cgacccggcagtgcggacagcgaggcggcggaccgggtggtgacggtgatggaggataac
aagctgcaggtccctgctgacgtgtactccgggttggaggcggccctgggcggtcgcccc
cgcatgcgggactcggtgctgggggtggcggggggcaggctggaggacaccgacatggac
ctgacgggttcggggctggagagcagtgtgtccgtagtgggtgatgaggaggacgagggg
gaggggggtgagggggtattggagggggtgctgggggcaggggagggagaggaggaggag
gaagaggaggaggggggtgcggaggaggagggcgagggcgaggaggaggagctggaactg
tacggcgagtacgaggaggatcctgcgcaactggaggccgagcaactggagcttcagcgg
ctgttccagcaggatggtgaggaggacgatgcctggttggacgagctggacgacacaaca
gacttagaggaagtacgagcagccgctgaggccgaggccgaggctgcccgccaagccgag
atggtggcggccaccctggagtccgtacgagcacgcaaccccctggcggcggccctcctg
gagcgccagttagcggcgatgcagcaggcggcggaggcgctggcggaggccgaggcggcg
gacgaggccgagggcgaggaggagggccagctgcccgctgaagccggcacggaggccgga
gctggcgggatagtgccgtacggcgctggcggcatggacggggctgagggttgggaggcg
gaggaggatgcagaggagggaggagagggggaggaggaggagggcggggacttggcggat
ttgggagcgatggctatggaggcggagtgggatgcttcggcggttctggagctgccgccg
gtggtgttggcggaggcggcggcggcgacggaggcggatttggacgagacgggcggcctg
gaggaagaagacaggatactgctccgccgtatcgccagcaaggcccgggtgctagcccag
ctcagcgccctcaacgacatggccgcacaagcacaccccgacggcgcagcagcggcggac
gcagaggtgacggaggcgcttcgccgcgtacgacaagctatggcggagggcgccgccgct
acctcgatcatagccgccgcggcggcagcagccggcgaaacgccggccagcttggcggcg
gcggcggccgacgaagcagggcttgatgctgtgggattggagctggaagaagctgaggag
gccgaggagggggagggtgaggatgtgttgctgccggaacatttggagccgggtgtggat
gaggaggccttggatgggccggctaaggagctgctgcacagtgtgatggcagaggcggag
gcgatactggcggcagaggaggccgaggaggaggccgaggccgaggaggaggatggcgga
gcgggcgaggcggagtgggaggaggaggaggaggagggggctgagtttgatgggttgacg
gtgggcgcggaggagacggcggctgatgcggcgatgttgcggcggttgctggaggctgcg
gaccagctgggtcccgagcttaatgaggagcagcaggagttgtacgacatgttggaacgc
ggtgatacttcctccctggagtccaaggtcggtcccgaggtgatgtcctggctggcggag
gacctgcagcggctagcggcacaggaggaggttgagctccaggagggccctatgggtggg
ctggcggagcagcagcagcagcagccgcagcagggcgaggaggaggaggaggaggagctg
ggcgacggtgtgcccgagctacccctgggctggcgcctcaacgaccgctttatggacacc
tttgcggcggtgctgcgggagcgggcggccgcagcggcggagcgcggcatcgcggacgac
ggccccgaggtggccgctgtggatgcgctgctggccatggcgtatggctaccggccgcag
ggcgcggcggacctgcaggaggaggaggaggaggaagatcggtggcagggtgagggtgag
gaggtggacgaggagttggagacagtgcaacgggaggcaagagaggcgttgcaggcgctg
gcaaaggagatggggggccctggtgaggcggctgcgcgggaggcggcggagcgggcgctg
gaggaggtgatggccgtgcagacggagcggtacgaagaggccaaagcggaggaggaggcg
gggccgagggtgcaggtgccgctgccggcgactgcggccgcggcggctgcggcagctctg
gcggcgggcgggttggaggaggggcccgcagactgggaggaagagggcgagggcgaggag
gaggagggggaggaaaggggaggggccggcagcgggtttaaggtttcggaggcggtgcca
ccggaggtggcggctgcgttgcttcagagcctgcggccggttgcgggtcccgtgtatttt
ggggcgcagcagcggcagcagcgtgaggaggaggaggaggaggaggaggaggatggcggg
ctcgtgggaacgtccacagccgcggtggcggagatggcgccgcaggcggaggaggaggag
gaggaggcagaggaggaagagccgcctgtccgaggcaaggggcgagggcggagtggcagc
gggccgggcagcgcgcgggcgcggaggggcttccggtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (102)   
   KEGG ORTHOLOGY (1)   
   RefGene (96)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (112)   

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