KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_104642
Entry
VOLCADRAFT_104642 CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K12821  pre-mRNA-processing factor 40
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VOLCADRAFT_104642
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vcn03041]
    VOLCADRAFT_104642
Spliceosome [BR:vcn03041]
 Complex A
  U1 snRNP components
   U1 related factors
    VOLCADRAFT_104642
 Complex B
    VOLCADRAFT_104642
SSDB
Motif
Pfam: FF WW HEPN_RES_NTD1
Other DBs
NCBI-GeneID: 9619732
NCBI-ProteinID: XP_002950379
JGI: 104642
UniProt: D8TVH9
Position
Unknown
AA seq 951 aa
MAGRGRAATLPAWMTTRTFRAWRPALRWAPKLPTAPAPLPRGSTDPATHRCHAARLLLRG
RHPGTLQEALGVGRITSRRKGRELRGLRPRGLGHHREQALRRQGIHRQDNSRLPGRAHRH
LCLLRRQDSRRRWASNLGLHGAPPPGMMGPRPPPGPFPGMGPPPPGMPYPPPGAHMPPGP
GMMPPPYGMQPGGPPPMGMPPPAGWHPGMPPPGYPPRPMPGFPPGMPPPGMPPPGMPGMP
MGPPPMAGGMQPLPGAPPGHPAPQQQAPQQQPPPQAAAPGQQAQGQQQAQQQHSAAAQQA
AAASAAATAAQGAAAAASSGPPKEWTEHTAPDGRKYYYNAKTKQSSWDKPEEFMTPQEKA
EASGWKEYTAPDGRKYYHNRVTKESKWTMPDELKAALAGGGGGAAAGTGGAIASAPAPAA
GGAAAAKPAAVQVVSLAAADGAASRGGEAAAATPAAAGTGGGAASSLASPSATEGPSQSA
ASADPKSYTFATKEEAKDAFKELLASVGCRSDWTWEQAMRLTVNDPRYSALKTLGERKQT
FNEYVQARRNEEKEEERRRQRQAREDFLAMLASSEELKVTHPFRRAKELFEDDPRWKAVP
EREREELFHDAQRERDKREKEERRQERKRRCNAFRELLESSGLKPGAEWRKVSKRLEGEE
EYEALDKVERLEVFQEFVKDLERREKEEKEREKEERKRQERRARDAFKDLLRRHRDEGLI
SVRSRWKEYSEQVVSEEAYRAVEANTSGSRPKELFEDLIEEMEQEYEKAKDTLKVLLKDG
GFTVTPTTSYEQFEDALAAAAAGSPDADTTGKLAALLPTYKRTYYEETVAKAKVREAEEA
ERRRRARDKLSSYMRHCRPAVREDSAWEDWLREHEREPEVKALPLEEVHAMFDEHDRSDE
DEDHKSKKHKKDKDRERDRDRERERERERERERERGGRAGDSDQDSGEIRD
NT seq 2856 nt   +upstreamnt  +downstreamnt
atggcaggacgcgggagagccgccacattgccagcatggatgactacccggaccttccgc
gcctggcgtcccgctcttcggtgggcccccaagctccctaccgcaccagccccactgcct
cggggctccactgaccccgccacccaccgctgccatgcggcgaggcttttgctgaggggc
cggcacccgggaacactccaggaggcgctgggggtgggccgcatcacctcgcgccgcaag
ggccgggaactccggggactgcgcccccgggggctgggccaccaccgggagcaggctctg
cgccggcagggcatccaccgccaggacaacagccgcctaccgggtcgggcgcaccgtcac
ctgtgtctactccgcagacaggacagccgccggcgctgggccagcaacctggggttgcac
ggagcgccgccgccagggatgatgggcccgcggccgccgccggggccctttcccggaatg
gggccgccgccgccgggtatgccttatcccccgccgggtgcccatatgcctccggggccg
ggcatgatgccgccaccgtacggtatgcagccaggtggcccgccgcccatggggatgccc
ccacctgccggctggcacccaggcatgccgccgcctgggtatccccctcggcccatgcca
ggattcccacccggcatgccgcccccggggatgccgcctcctggaatgcccggtatgccg
atggggccaccgcccatggctgggggcatgcagcccctccctggcgccccgccgggccac
ccggccccgcaacagcaggccccacagcagcaaccaccaccacaggcagcggctccaggg
cagcaagcacaagggcagcagcaagcccagcagcagcattcggcggcggcgcagcaggcg
gcagccgctagcgcggcggcgaccgcggcgcaaggggccgcggccgctgcttcttccggt
cctcccaaggagtggacggagcacacggcgcctgacggacgcaagtactattacaacgcg
aagacgaagcagtccagttgggacaaaccagaggagttcatgacaccgcaggagaaggcg
gaggctagtggctggaaggagtacaccgcccctgatggccgcaagtattaccacaacagg
gtaaccaaggagagcaaatggaccatgccggatgaactcaaggcagcgctggcgggtggc
ggcggtggagcagctgctggcaccggtggagccatcgctagcgcgccggcgccggcggct
ggtggcgctgcagccgcaaagccggctgccgtgcaagttgtatcgctggcggcggccgac
ggcgccgcttcccgaggcggcgaagctgcagcagcgacgcctgcggcggcggggacgggc
ggtggcgctgccagcagcctggcctccccttcggctacggaggggccctcgcaatcggct
gcttcggcagacccgaaaagctacaccttcgccaccaaggaggaggctaaggacgcattc
aaggagctgctggcaagtgtgggatgtcgcagcgactggacctgggagcaggccatgagg
ctgactgtgaacgatccacgctactcggcgctcaagacgctgggcgagcgcaagcagacg
ttcaacgagtacgtgcaagcgcggcggaacgaggagaaagaggaggagcggcggcggcag
cggcaggcgcgtgaggatttcctggctatgttggcctcctctgaagaactcaaggtgacc
caccccttccggcgagccaaggagctgtttgaggacgaccctcgctggaaggcggttccg
gagcgggagcgagaagagctctttcacgacgcacagcgcgagcgggacaagcgagagaag
gaggagcggcggcaggagcgcaaacggcgctgtaacgcctttcgcgagctgctggagagc
tcgggtttaaaaccgggggctgagtggcgcaaggtgtccaagcgcctagagggcgaagag
gaatacgaggcgcttgacaaggtggagcgactcgaggtgttccaggaatttgtcaaggac
ctggagcggcgggagaaggaggagaaggagcgcgagaaggaggagcgcaaacggcaggag
cgccgtgcgcgcgacgcgttcaaggacctcttgcggaggcatagggatgaagggctcatc
agtgtgcgcagccgttggaaggagtactcggagcaagtggtttcggaggaggcctaccgg
gcagtggaggcaaatacgtcgggaagcaggcccaaggagctgtttgaggatcttatcgag
gagatggagcaggagtacgagaaggccaaggatacgttgaaggtgttgctgaaggacggc
gggtttactgttacgcctaccacatcgtacgagcaatttgaagatgcgctggcggcggca
gcggcggggtcgcctgacgcggacacaacgggcaaactggcggcgctacttcccacctac
aagcgcacctactacgaggagacggtggccaaggcgaaggttcgggaggcggaggaagcc
gagcgtcgccgtcgtgctcgtgacaagttatcttcctacatgcggcactgccggccagct
gtgcgggaggacagtgcgtgggaggactggctgcgggagcacgagcgcgaacccgaggtc
aaagcgctgcctctggaggaggtccacgccatgtttgatgagcatgaccgcagtgacgag
gacgaggaccacaagtccaagaagcataagaaggacaaggacagggagcgagatcgggat
agggaacgcgagcgggaacgcgaacgcgagcgggagcgggagcggggcggtcgtgcaggc
gactctgaccaggacagcggagagatccgagattaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (283)   
   KEGG ORTHOLOGY (1)   
   RefGene (277)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (293)   

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