KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_106747
Entry
VOLCADRAFT_106747 CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03020  RNA polymerase
vcn03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    VOLCADRAFT_106747
  09124 Replication and repair
   03420 Nucleotide excision repair
    VOLCADRAFT_106747
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vcn03021]
    VOLCADRAFT_106747
   03400 DNA repair and recombination proteins [BR:vcn03400]
    VOLCADRAFT_106747
Transcription machinery [BR:vcn03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     VOLCADRAFT_106747
  RNA polymerase III system
   RNA polymerase III
     VOLCADRAFT_106747
  RNA polymerase I system
   RNA polymerase I
     VOLCADRAFT_106747
DNA repair and recombination proteins [BR:vcn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      VOLCADRAFT_106747
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-GeneID: 9616256
NCBI-ProteinID: XP_002955345
JGI: 106747
UniProt: D8U9I0
Position
Unknown
AA seq 132 aa
MADDFDDAGGMEEPMDLGEEPALEDFAGEAHEGDGNIDILDNQEQQQQQGGGQRQRITTR
YMTKYEKARVLGTRALQISMNAPVMVELSGETDPLEIAMKELREKKVPFTIRRYLPDGSY
EDWSISELVVPD
NT seq 399 nt   +upstreamnt  +downstreamnt
atggcggacgattttgatgacgcgggaggcatggaggagccaatggaccttggcgaggag
ccagccctcgaagatttcgctggcgaagcacatgaaggcgacggaaacattgatatactt
gataaccaagagcagcagcagcagcaaggggggggccagcgacaaagaatcaccacgcgt
tacatgactaaatatgaaaaagcgcgagtgcttggaacccgagcactacaaattagcatg
aacgcacccgtcatggtggaactgtctggggagaccgacccgctcgagatcgccatgaag
gagcttcgggaaaagaaggtaccatttacaatccgacggtatctgcccgatggaagctac
gaggactggagcatcagtgagctggtggttccagattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (115)   
   KEGG ORTHOLOGY (1)   
   RefGene (109)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (125)   

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