KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_106802
Entry
VOLCADRAFT_106802 CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K15172  transcription elongation factor SPT5
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    VOLCADRAFT_106802
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vcn03021]
    VOLCADRAFT_106802
   03019 Messenger RNA biogenesis [BR:vcn03019]
    VOLCADRAFT_106802
Transcription machinery [BR:vcn03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     VOLCADRAFT_106802
  RNA polymerase I system
     VOLCADRAFT_106802
Messenger RNA biogenesis [BR:vcn03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     VOLCADRAFT_106802
SSDB
Motif
Pfam: Spt5-NGN KOW Spt5_N zf-CCCH
Other DBs
NCBI-GeneID: 9616597
NCBI-ProteinID: XP_002955400
JGI: 106802
UniProt: D8U9U3
Position
Unknown
AA seq 2000 aa
MGKKRTYDDDDDVEEDLEDDDAAAGLEDSEDAGGSDGEGPSRKKKRRGASFIDEAAEEDD
EDDDDDDEGDKQKKKGRSVFIDDIADVDDEDEEEEVEEDAEDLIDDRDVEIPDAAAAPLN
YRRITREEDNAREEDILRRIEERYRDYAGEDIPDTAETGVVGQQGLLPTPNDPKLWLVTC
KAGHEREAVVQLLQKSYTMAERGAPLRILSAVALDHLPGFIYVEAAKESHVMDAIRGLRT
VYVGKGAKLVPLNEMVDAVTVNKKAKDDMARDTWVRVRGGLYKDDLARVVDVDPVAGRAT
IKLLHRLDFAAMVNRTEEQRKKNPFGRAPTVRPIPKVFNPEEARVAGLLVQRLPAQDGMP
SYQVLSHTFVGGYLLRRVGMKTLIVLDTLPGLEEVARFNAGATTGDDDAPATDLSSLMAT
LPTDGTSAHKGTFMKGDKARTGARGLGDLENLTARVTGLTADGAKVTAIPDIKGFAEEVE
FEPDELTKVFSVGQRVRVLAGQYAGDTGMVVRVEEALCYLISDTNREEIKVFARDLTESE
VVAAGIEMLGEYQLHDLVQINQNTAGVVVKIEKDAARVLTNNGTPEQPDVRLYRLTDIQR
KVTFKQKPVTQDQAGNPLREKDYVVIQSGRLKDRGGSVVYIWRGTLFLHCKEITENGGYV
AVRSFSTRLRGASSGGGAGGSLNSARASAILGGGTPGSIRSTPGSVGPSPGGSAYGGGGS
YHRYTPASPRPDDPSSSGGGIGADGKFQMSLPQRGGSYGGGRGGGGGGAGGGSYSRRSQQ
AQPHSQYVGKVVRVVKGPYNGYRGRVKQQTATHVQLELDAVAGRPVTVPMEYVTLGEAPK
SGTAAAVVTAGYRAGAGGYGAAAGRGGDGRWGADGQPPQTPAHPGMQTPAHYSMTPAHPS
MTPAHAPYTPAHAPYTPAHHTSGENDGYWGDGGSRHQPMTAPTPGYGGTAPTPQQQAMTP
ALTPQGFTPQEAMHAPTPADLHLHPHGVAGTCLLGLENCAVGGVRGVGTVMTLAVVDEDG
DGGTPNLAPTPGLARTPYLAAPTPGVDAAPTPGGAPYDAGGYTPGTHAATGTPGLTAPTP
GMPTAYTPAFTPSGHIYTPGTPGGLDVGTPAVLGIMEDFGTWGGILVQTPDGRSCVVRTA
QPDGTLSLQPGVYSPDAGFTLDAGAPRETHDARTLTVVRPSKRDKVKVIKAETQDVLGVT
GTLIGIDNADGIVKCDLCVLDLADVSGTRGGQGTRLCHLLADESLLRRLSGNTGEDCVSA
LRSLNLPDSFWTDEFKVVPCSKTYAHKWTLCPCAHIGETARRRCPRTVNYKAVLCPLVKA
KKTCPLGEGCTYAHNVFEHWLHPSRYKTRLCSFGRNCNRSICFFAHSAEELRCVPCVDDK
EGDDREYLVQLLMAQENGLMQASTLESVPPAPMPPLLPTIMPDLSAALQQALQQPLPPSA
RTSVNGLSDAAAIMSARQSMNGLSVSELMSARPSLSGLPGDPSAAMLRASMSGAPDAHGP
GNMLLRARPSMNGLSDRTTTAFASARASMNGLPDGAFARARPSLNGLSENNAATAASMLL
SMQRAVSTEINSALNAATMQRGMSSELGVMGGAAGMGMAMGMGMNMAAPFHAAAMQHALS
GDLPSAHLNAAAVAMERAFSRELNTGGTVGGTAGSISPVQPSAEAAAAAALERAFPGMQS
QLPPQQRELVGPASHRRDLSSLNPTQSINSVESDSLIQLRHGPMGGVGTGGGTTGAAVLG
GYGACGAFGFEAALGGPQPPARISDPGSNFHMALPSGMAGMAASHARVSDSGNKLGMICS
KDLQNLESLLPLMNNALASGALALPMAASGDNMRRSNSGGSNSSGRLLSPSMQDHISSGS
PSHSGTLTPLSSKSVEAGSAEGAGGGAVSATATASGNTSSPSRTFEGTAALKGMYMAAMA
AASAGCGSGIHPNGATNFALHQAPSGSGADQAYLNGLVAQLQDQGVNKDQLVSSEQCVEL
FMRRSYAVFLQIYAAGFRRH
NT seq 6003 nt   +upstreamnt  +downstreamnt
atgggtaagaagcgcacatacgatgatgacgacgatgtggaggaggatcttgaggatgac
gatgcagctgccggacttgaggatagtgaggatgcaggaggcagcgacggcgaggggccg
agcagaaaaaagaagcggcgaggggcatccttcatagatgaggccgctgaggaggacgac
gaggatgatgatgatgatgatgaaggagacaagcaaaagaaaaaagggcgatcggtgttt
attgatgatattgccgacgtcgatgacgaggatgaggaagaggaggtcgaagaggacgca
gaggatttgattgatgaccgtgacgtggagattccggacgcagcagccgctccgctgaac
taccggcgcatcacgcgcgaggaggacaatgcgcgggaggaggacattctccgccgaatt
gaggagcgctacagggactacgcgggcgaggacattccggacacggcggagacgggagtg
gtgggccagcagggcctactgcccacacccaacgaccccaagctctggctggtgacctgc
aaggccggccatgagcgggaggcggtagtgcagctgctgcagaagtcttacacgatggcg
gagcggggtgcacctctgcggattttgtctgcggtggcactggatcacttgccgggcttc
atctacgtggaggccgccaaggagtcccacgtcatggacgccatccggggccttcgaact
gtgtacgtgggcaagggcgccaagctggtgccgctgaatgaaatggtggacgcggtgact
gtcaacaagaaggccaaggacgatatggctcgcgacacgtgggttcgcgtgcgcggcggt
ctgtataaggacgacctggctcgggtggtggatgttgacccagtcgcggggcgagctacc
atcaagttgctgcatcgcctggacttcgcggctatggtgaacaggacggaggagcagcgc
aagaagaacccctttggtcgagcaccgacagtgcggcccatacccaaggtgttcaatccg
gaggaggcccgtgtagccggcttgctggtccagcggctccccgcgcaggacggcatgccg
tcctaccaggtcctctcacacacctttgtgggggggtacctgctgagacgagtggggatg
aagacgctcattgtgctggacacgctgccgggcctggaggaggtggctcgcttcaacgct
ggcgccaccacaggcgatgacgacgcacccgccactgacctgtcctccctcatggctacc
ctgcccaccgacggcacgtccgctcacaaggggaccttcatgaagggcgacaaggcaaga
acgggcgctagaggtttgggtgatctggagaacttgacggcacgtgttacgggtctcacg
gcggatggcgctaaagtaacggcgattccagacatcaagggctttgcggaggaggtggag
tttgagcccgacgagctgacaaaggtgttttcggtggggcagcgtgtgcgggtactggcg
ggccagtatgcgggcgacacgggcatggtggtgcgggtggaggaggcgctgtgctacctc
atctcggacaccaaccgcgaggagatcaaggtgtttgccagggacctgacagagagtgag
gtagtggccgcgggcattgagatgttgggtgagtaccagctgcatgacctggtgcagatc
aaccagaacacggccggtgtggtggtcaagattgagaaggacgcggcaagggtcctaacc
aacaacggcacccccgaacagcccgatgtgcggctgtaccggctgacagacatccagcgg
aaggtcacgttcaagcagaagccagtgactcaggatcaggcgggaaacccgctccgggaa
aaggactatgtggtgatccagtcgggtcgcttaaaggatcggggcggcagcgtcgtctac
atttggcgcggcacgcttttcctacactgcaaagaaattacggagaatggcggctacgtg
gccgtgcgttccttttccactcgcctgcgcggcgcgtccagcggcggcggagccggcggc
tccctcaactcggcacgtgccagcgccatccttggcggcggcacgcccggcagtatccga
agcaccccgggcagcgtcgggccgtcaccggggggtagcgcgtacggtggaggtggaagc
tatcaccggtacacgccagcatcgccgcgacccgatgacccgtcgagcagcggtggcggc
atcggcgcagatggcaagttccaaatgtcgttgccgcagcgcggtggctcttatggtggc
ggccgcggcggcggcgggggcggggccggtggagggtcgtacagccggcggtcacagcag
gcacagccacattcacaatatgtggggaaagtggtacgtgttgtgaagggtccctacaac
ggctaccgaggccgtgtcaaacagcaaaccgccacccacgttcagctggagctcgatgca
gtggcggggcggccggtgactgtgcccatggagtacgtgacgctgggagaagcacccaag
tcgggcaccgcggcggcggtggtgacggcaggctaccgcgcgggtgccgggggttacggg
gccgctgcagggcgcggaggcgacggccggtggggcgccgacgggcaaccgccccagaca
ccagcgcacccgggcatgcagacgcccgcccactactccatgacgcccgcacatccatcc
atgaccccagcgcacgcgccgtacacgccagcccatgcgccgtacactcccgcacaccac
acgagtggcgagaacgacggctactggggcgacggcggatcacggcaccagcccatgact
gcgcccacgcccggctacggcggcaccgcccccacgccgcagcagcaggccatgacgccc
gcgcttacgccgcagggcttcacgccgcaagaggctatgcacgcgcccacaccggcggac
cttcatctacaccctcacggtgttgcgggtacgtgcctgctcggactagagaattgcgcg
gtcgggggggttcggggcgtggggacagtgatgacgttggcagtggttgatgaggatggg
gacggaggtacccccaatttggcgcctacacctggcctggcccgcacaccctacctggct
gctcccacgcctggggtggacgcggcgccgacgccgggaggagcgccctacgatgcaggc
gggtatacacccggcacacacgccgctacgggcacgccggggctcactgcgcccacgccg
ggcatgccgactgcctacacgccggccttcactccttcggggcacatctacacgccaggc
acgccgggcggcctggacgtggggacgcccgccgtgctgggtatcatggaggatttcggc
acgtggggtggcatcctggtgcagacccccgatggccgatcgtgtgtggtgcggaccgcg
cagcccgatgggacgctcagtctgcagccgggggtatactcgccggatgctggcttcacg
ctcgacgccggggccccgcgtgagacacacgacgcacgtacgctaacagttgtgcggcct
tcgaagcgcgataaggtcaaggtcatcaaggcagagacgcaggacgtgctgggcgtaacc
ggcaccctcatcggcattgacaatgcagacggtattgtcaaatgcgacctctgtgtgttg
gacttggccgatgtgtcaggaacgcgtggggggcaggggacaaggctctgccacctgcta
gcggacgagagtctccttcgccggctctctggcaacactggcgaggattgcgtcagcgca
ctgaggtcattgaatctaccagacagcttttggacagacgagtttaaggtggtgccttgt
tccaagacttacgcgcacaagtggacgctttgcccctgcgctcacattggagaaacggcg
cggaggcgatgccctcgtaccgttaactacaaggcggttctctgcccactagtgaaagcg
aaaaagacttgtcctctcggggagggatgcacctacgcgcacaatgtctttgagcattgg
ctgcatccatccaggtacaagactcgcctctgctcctttggtcgcaactgcaatcgatct
atttgctttttcgcgcacagcgcggaggagcttcggtgcgtgccgtgtgtggatgacaag
gaaggtgatgaccgggagtacctcgtgcaactcctcatggcgcaagagaatggtttaatg
caggcatccacattggagtcggtgccaccggcgcccatgccgccgttgctgccgaccatc
atgccggacctgagcgccgccctgcagcaagccctgcaacagccgttacccccatccgcc
cggacctctgtcaacggtctgtcggacgcagccgcgattatgtcggcgcgccagtccatg
aacggcttgtccgtgagcgagctcatgtctgctcgaccttccttgtcgggcctgcccggt
gaccccagcgctgcgatgcttcgcgcctccatgtctggtgccccggatgcccatggtcct
ggcaacatgctgctgagggctcgtccgtccatgaatggcctgtcggaccgcaccaccaca
gccttcgcgtcggcgcgggcttccatgaatggccttcccgatggcgcctttgcgcgtgcg
cgtccctcactcaacggcctctccgagaacaacgccgccaccgcagcgagcatgctcttg
tctatgcagcgtgccgtttctaccgagatcaactcggccttgaacgccgcaaccatgcaa
cgcggcatgtcgagcgaacttggcgttatgggcggtgcggcgggtatgggaatggcgatg
gggatgggaatgaacatggcagcacccttccatgctgccgcgatgcagcacgccttgtcg
ggagatctcccatcggcgcaccttaatgcggccgcggtcgctatggagcgtgcgttctcc
cgcgagctgaacactggaggtaccgttggcggcaccgccggctccatctcaccagtccaa
ccatcagccgaagcggctgcggcagcggctctcgagcgcgctttccctggcatgcagtcc
cagctgccaccgcaacagcgggagttggttgggcccgcttcccaccggcgagacctgtct
tcattgaaccccacacagtccattaactcggttgagtcggactccctaatccagctgcga
cacggacccatgggcggcgtggggacaggaggcggcacaaccggcgccgcggtcctaggc
ggttacggagcatgcggtgctttcggctttgaggccgcattgggtggtcctcaaccaccg
gctcgcatcagcgacccaggttccaacttccatatggccctgcctagtgggatggcgggc
atggcggcgtcccatgcgcgcgtctctgactctggcaacaagctgggcatgatctgcagt
aaggatctgcagaacctggagtcactgctgccgttgatgaacaacgccctagcttctggg
gcactggcgctgccaatggcggcctcgggcgacaacatgcggcgcagcaactctggtggc
agcaacagcagcggtcgcttgctgtcgccgtccatgcaagaccacatcagctctggctca
ccgtcgcatagcggcaccctgactccgctgtcgtctaagtccgtcgaggcgggttcggcg
gagggcgcaggcggaggcgctgtttcggctactgctaccgcttctggcaatactagctcg
ccgtcaaggacgttcgaaggcacggctgcacttaagggaatgtacatggcggcaatggcg
gcggcgtccgcgggctgtggcagcggcatccaccctaacggcgcaaccaacttcgccctg
catcaggctccaagcggtagtggtgcagaccaggcgtatctgaacggcctggtggcgcag
ctgcaggatcaaggtgtaaacaaggaccaattggtgtcgtctgagcaatgtgtggagctg
ttcatgcggcggtcctatgccgtgttcctgcaaatctatgcggcgggatttcggcggcac
tga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (83)   
   KEGG ORTHOLOGY (1)   
   RefGene (77)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (95)   

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