KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_82170Help
Entry
VOLCADRAFT_82170  CDS       T01330                                 

Gene name
splh1
Definition
(RefSeq) DEAH-box nuclear pre-mRNA splicing factor
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13]
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VOLCADRAFT_82170 (splh1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vcn03041]
    VOLCADRAFT_82170 (splh1)
Enzymes [BR:vcn01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     VOLCADRAFT_82170 (splh1)
Spliceosome [BR:vcn03041]
 Complex C
  Other components
   Step II factors
    VOLCADRAFT_82170 (splh1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: OB_NTP_bind HA2 Helicase_C
Motif
Other DBs
NCBI-GeneID: 9622310
NCBI-ProteinID: XP_002953292
JGI: 82170
UniProt: D8U3W7
Position
Unknown
AA seq 626 aa AA seqDB search
MTVARRVAEEMGTKLGHKVGYAIRFEDVTSPSTSIKYMTDGLLLREALVDPLLSRYRIVI
IDEAHERTVHTDVLFGLLKGVQRTLFPYNSFCSGPAQCSLRSARPDFLRIKSARRGDDFR
LIVMSATLDAARFVDYFPGAVAALIRGRQFPVQVMYTAKPEDNYLDAAINATLQVHTDEG
EGDILVFLTGQDEIDSAERLLKVRNQGSKADPCRELLVLPIYAALPPEQQMKVFEPAPEG
QRKAILATNIAETSITIPGVRYVIDTGHVKARDYNAKLGLESLAVVPVSQAQARQRSGRA
GREGPGKAFRLYTESDFSSLAPVTPPEITRCNLGSVVLQLKAMGIQDVLGFDFMDPPPRA
AILRSLELLYALGALDSSGRLTEGVGSRLARLPVDPMFGRVLLAACEMGCGQEGVAVVAM
VSTDNVFHTPRAKEREWRAARLKFLAREGDHLTLLNVFRGFRELPKDSHKARTTWCSDNF
INIRAMRKAEDIYDQLVRFLGPPSPPGLGLALVSCGDDTAPLRRALTAGLFPHAARLQPD
GSYRVLATGRQVFLHPSSVLLDRKPDCLVFNELMHTTRTYARDAVAIEARWLPELAPAVF
AAKAGAAAASAAGTATGAAGGTPTRR
NT seq 1881 nt NT seq  +upstreamnt  +downstreamnt
atgacggtggctcgtcgcgtagcggaggagatgggtaccaagctggggcacaaggtgggg
tacgctatccgcttcgaggatgtgacctcgccctccaccagcatcaagtacatgacggac
gggttgctgctgagggaggccctggtggacccgttgttgagcaggtaccgcatcgtcatc
attgacgaggcacatgagcggacggtgcacaccgacgtgttgtttgggctgctcaagggg
gtgcagcgcacattgtttccttataattcattctgcagcggccctgcacaatgcagcctt
cggtcggcccggcctgattttctacgcatcaaatcggccaggcgcggtgacgacttccgt
cttattgtcatgtcggccacattggatgcagctcgctttgtggactacttccccggggcg
gtggcagcactgatacgcggccgacaattccctgtgcaggtgatgtatacagcaaagccg
gaggacaactacctcgacgccgcaatcaacgccacgctacaggtccacacagatgagggt
gagggggacattttggtcttccttaccgggcaagatgagatagactccgcggagaggctg
ctaaaggtcaggaaccaaggctccaaggcggacccctgccgggagctgctggtgctgccc
atatacgctgcattgccgcccgagcagcagatgaaggtatttgagcccgcacccgagggt
cagcgtaaagccatcctcgccaccaatatcgccgagacgtccattaccatccctggagtc
aggtacgtcattgacacgggccacgtcaaggcgcgtgactacaacgccaaattgggtcta
gagtctttggcggtggtgcccgtctcccaggctcaggcacggcagcgcagcgggcgggca
ggtcgcgagggccccgggaaggccttccggctgtacacggagtcggacttctcctccctg
gcgcccgtcacaccgcccgagatcaccaggtgtaacctggggagcgtcgtactgcagctc
aaagcgatgggcatccaggacgtacttgggttcgactttatggacccaccaccgcgagcg
gcaattctgagatccttagagttgttgtacgccctaggcgccctggactcctcgggtcgc
ctgactgagggcgtgggctcacggctggcgcgtctgcctgtggaccccatgtttggtcgg
gtgctgctggcggcttgcgagatggggtgcggtcaggagggggtggctgtcgtggccatg
gtatccacggataacgtattccacacgccaagggcaaaagagcgtgagtggcgagctgcg
cggctcaagttcctggcccgcgagggggaccacctcacattgttaaacgtgttccggggc
ttccgagagctacccaaggacagccataaagcccgaaccacttggtgctcagacaacttc
attaacatcagggcgatgcgcaaggccgaggacatttacgaccagctggttcgcttcctg
ggcccgccctcaccgccgggtctgggcctggccctggtgtcctgcggcgacgacaccgca
cctctccgacgggccctgactgctgggctgtttcctcatgccgccaggctgcaacccgat
gggtcctaccgagtgctggccaccgggcgtcaggtgttcctgcaccccagctccgtcctg
cttgatcgcaagcccgactgcttggtctttaacgagctcatgcacaccacccggacctac
gcacgagatgcagtggccatcgaggccagatggctgcccgagctggcgcctgctgtgttc
gcagccaaggctggcgcggcagccgccagcgccgctggcacagctactggggcagcgggc
ggaacgccaacccgaagatga

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