KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_89331
Entry
VOLCADRAFT_89331  CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VOLCADRAFT_89331
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vcn03041]
    VOLCADRAFT_89331
Spliceosome [BR:vcn03041]
 Complex A
  U2 snRNP components
   U2 related factors
    VOLCADRAFT_89331
 Complex B
    VOLCADRAFT_89331
SSDB
Motif
Pfam: RRM_1 RRM_occluded
Other DBs
NCBI-GeneID: 9623755
NCBI-ProteinID: XP_002948948
JGI: 89331
UniProt: D8TRF4
Position
Unknown
AA seq 729 aa
MGDHDDYPHEHDRLYQAERGHEGGRVKSRDDGRDYRERLDREPPRDYERRRDERDYYDRR
DEDRRRPRGDDRYERGPGTRDREYPDRRDVRSDPRDYGRERRRSRSRDRRRSRSRDRYDS
RDRRDDRDAGRRGRGSRGRRDDYSDEDDLYGGYKPRKRQAPPDPSKYDKPLPPGAGPGYI
SDPFYYLRQNVPTDPAEAQRLWLEQQLRSRQMVLQQQAASAAAASAKTQRELYIGNLVPG
AVTDVALRQLFNTTLVAAFPVTGSAEPVVNVNLHSDGRYAFVEFRTPEMATAALALNAQV
QLLGQTISVGRPSGYVDPQKAAAAAQAAAQALAAFQNVLKEIKRGLCFVARGISVCVMLL
REAALVFLARAGPRSIVCVLNKSTLVSAGDMAALAANATAAGMNLAQLGLANLVLPKPAE
GADTAPAVAATASASAPPSREQTPTIAATAGAGGTLASGCISQDPDKEQQQQAVLQLLQP
QEKEGDGQQDQRESQQERQRQEQHPATSVEGEGDMEVVAGANGTAVVVNGDDAEAAAAAA
AATRFFCVLGMLNADMLLDDEEYEAVIDDLKDECDRHAPGNVVAVKVPRPPEEVRAQTAD
FIGIGQYGKAFVCFKDATSAQRAHAAIHGRLFAGNTVQVQYITEEEFNARGHHQWRQQRQ
YQAAEESKTRAQSKTRSRACAGAGSTYLETLATLHTPNVSASNAHHRGCKCRSGVWDEDG
TSDFSKAVA
NT seq 2190 nt   +upstreamnt  +downstreamnt
atgggcgaccatgatgactatccgcatgaacatgatcggctataccaggccgaacgtgga
catgagggcggccgtgtgaaatctagagatgacggtcgcgattaccgtgaacgcctcgat
cgggaaccgccccgtgactatgagcgacgccgggatgagcgggactattatgacaggcgg
gatgaggaccggcggaggccgcgcggcgacgaccgctacgagcgtggaccgggaaccagg
gacagagagtacccagaccggcgagacgtccgaagcgatccacgggattatgggcgtgaa
cggcgaaggtccaggtcacgggacaggcgccgttcgcgatcaagagaccgctacgatagc
agggacaggcgggacgaccgggacgcaggacgccgtggtcgcggcagccggggccgtcgg
gacgactacagtgacgaagacgacttatacggcggatacaagccgcggaagcgccaggct
cccccggatccttccaagtatgacaagccgttgcctccgggggctggtccgggctacatt
tccgatcccttttactacctgcgccagaatgtgccgacggatcctgcagaagcccaacgc
ttgtggctggaacagcagctgcgcagtcggcaaatggtgctgcagcaacaggcggcatca
gcggcggcggcgtcagccaagacgcagcgggagctctacattggcaaccttgtgcctggc
gcggtgacggatgtggcgctccgacaactcttcaacacgaccttggtagccgcattcccc
gtcaccggcagtgcggagccagtcgtgaatgtcaacctgcacagcgatgggcgctacgcg
tttgtggagttccgcacgccggagatggcgacggcggcgctggcgctgaatgcgcaggtt
caattgctgggtcagacaatctccgtgggccggcccagtggttacgtggacccgcagaaa
gcggctgcagctgcgcaggcggcggcacaggccttggcggccttccagaatgttctcaaa
gaaattaaacgagggctctgctttgttgcgcgcggtatatctgtttgtgtgatgctgttg
cgggaggcagcgctcgtgttcttggcgagagcaggaccgaggagcattgtctgcgtcctg
aacaagagcacgcttgtgtcggctggcgatatggcagccctggcagcaaacgctacagcc
gcgggtatgaatctcgcccagctgggcctcgcaaacctcgtccttcccaagccggcggag
ggtgccgacaccgcgccagcagtagctgctacagcgtctgcgtcagcgccgccatcgcgg
gagcagacaccgaccatagctgctactgccggtgccggcggtacgttagcttctggatgc
atctcccaggaccccgacaaggaacaacagcagcaggctgtgctacagctgctacagccg
caggagaaggaaggggatgggcaacaggatcaacgggagtcgcagcaagagcggcagcgg
caggagcagcatccagctacatctgttgaaggagagggtgatatggaggtagtagcagga
gccaatggcactgccgtcgtcgtcaacggggacgatgctgaggcggccgccgccgccgcc
gccgcgacgaggttcttctgtgtgttgggcatgctgaacgcggacatgctgctagatgac
gaggagtatgaagccgtcatcgacgacctgaaggacgagtgcgataggcacgccccagga
aatgtggtcgcggtgaaggtgccgaggccgccggaggaggtccgggcgcagactgccgat
ttcatcgggatcgggcaatatggcaaggcgtttgtatgtttcaaggacgccacctcggca
cagcgggcgcacgcggctattcacgggcggctcttcgcgggtaataccgtacaagtgcag
tacattacggaggaggagttcaatgcgcgggggcatcaccaatggcggcagcagcgacag
taccaggcagcggaggaaagcaagacgcgtgcgcaaagcaagacgcgttcgcgggcgtgt
gcgggagcgggtagcacctacttggagacgcttgcgactcttcacacgccaaacgtatcc
gcgagcaatgcacatcatcgcgggtgtaaatgtagaagtggagtgtgggatgaggacggc
acttcagactttagtaaggcagtggcttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (60)   
   KEGG ORTHOLOGY (1)   
   RefGene (54)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (69)   

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