KEGG   Vibrio cholerae O1 O395: VC0395_A0062
Entry
VC0395_A0062      CDS       T00520                                 
Symbol
rpoS
Name
(GenBank) RNA polymerase sigma factor RpoS
  KO
K03087  RNA polymerase nonessential primary-like sigma factor
Organism
vco  Vibrio cholerae O1 O395
Pathway
vco05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vco00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    VC0395_A0062 (rpoS)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vco03021]
    VC0395_A0062 (rpoS)
Transcription machinery [BR:vco03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     VC0395_A0062 (rpoS)
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 AAA_18
Other DBs
NCBI-ProteinID: ABQ21066
UniProt: A0A0H3AKB4
Position
2:55517..56524
AA seq 335 aa
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQ
MYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDL
IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYL
RTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTR
ERVRQIQVEGLRRLREILVKQGLNMEALFSVEYDN
NT seq 1008 nt   +upstreamnt  +downstreamnt
atgagtgtcagcaataccgtaaccaaagtagaagagttcgattttgaagatgaagcactg
gaagtgctagaaactgatgccgagctcaccagtgatgaagaattagttgctgttgaaggg
gcaagtgaagacgttcgtgaagagtttgatgcttctgcgaaaagtcttgatgcgacccag
atgtatctcagcgaaattggtttttcaccgctccttactgccgaagaagaagtgctttat
gctcgtcgtgccttacgtggtgatgaagccgcacgtaaacgcatgattgaaagtaacttg
cgtctggtggtaaaaatttcacgccgttacagcaaccgaggattagcactgctcgatctg
attgaagaaggtaatcttggtctgatccgtgcggttgagaaattcgatccagaacgcggt
ttccgcttctctacctacgcaacatggtggatccgtcaaaccattgaacgtgcgctgatg
aaccaaacacgcaccattcgtctaccgattcatgtcgtcaaagagctgaacatttatttg
cgtactgctcgcgaattatcacagcgccttgaccacgaacctacaccagaagaaattgct
cttgagttagaccgacctgtcgatgatgtcactaagatgctgcgtcttaacgaacggatc
agctcagtggatacgccaattggtggggatggagataaggcactgctggatattttgcca
gactctcacaatgccgatcctgagttttcaactcaagatgatgacattcgtgaatcgctg
ctcaactggttggatgaacttaatccaaagcaaaaagaagtgcttgcgcgtcgctttggg
cttcttggctatgaaccatcgaccttggaagaagtgggtcgtgagatcaatctcactcgt
gagcgtgttcgccaaatccaagtggaaggtctacgtcgtctgcgtgagattttggtgaaa
caaggtttgaatatggaagcgctgtttagcgtcgaatacgacaactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system