KEGG   Vibrio cholerae O1 O395: VC0395_A1654
Entry
VC0395_A1654      CDS       T00520                                 
Symbol
fliA
Name
(GenBank) RNA polymerase sigma factor for flagellar operon FliA
  KO
K02405  RNA polymerase sigma factor FliA
Organism
vco  Vibrio cholerae O1 O395
Pathway
vco02020  Two-component system
vco02040  Flagellar assembly
vco05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vco00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    VC0395_A1654 (fliA)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    VC0395_A1654 (fliA)
  09142 Cell motility
   02040 Flagellar assembly
    VC0395_A1654 (fliA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vco03021]
    VC0395_A1654 (fliA)
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:vco02035]
    VC0395_A1654 (fliA)
Transcription machinery [BR:vco03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     VC0395_A1654 (fliA)
Bacterial motility proteins [BR:vco02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    VC0395_A1654 (fliA)
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r3 Sigma70_r2 Sigma70_r4_2 HTH_23 UPF0122 GerE UPF0175 HTH_10 MarR_2 Rv2175c_wHTH HTH_24 Phage_terminase HTH_28 MarR
Other DBs
NCBI-ProteinID: ABQ21216
UniProt: A0A0H3AKM4
Position
2:complement(1774273..1775007)
AA seq 244 aa
MNKALTYDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQK
NYDGSKGASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTD
AEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISPFEEGEDNSPFHGVAEESFR
KALVESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLSSW
TRND
NT seq 735 nt   +upstreamnt  +downstreamnt
gtgaataaagcgcttacatacgatcaatacggaaatcttaatagccagcagctatttctt
gagaagtactctgtattggttaagcgtatcgctcatcatttgattggtcgtcttccgccc
agtgttctgatcgaagacctcattcaagctggcatggttggtttgcttgaggcacaaaaa
aattatgatggaagtaaaggcgcgagctttgaaacctatgccggaattcggattcgtggg
gctatgctcgacgatatccgacgtggtgactgggttccgcgatctgtgcacaaacataat
cgggaaatcagtcaagcgattgcagtgctcgagggagaactcaatcgcgatccaacggat
gctgaagtggcgaagtttttaaacatgtcactagagcagtatcacagcgtgctgatggac
attaactgttcacgtattgttgggatagaggatctcggtgtttctgacgacgcgatttca
ccgtttgaagagggggaagataactcgccttttcacggtgtcgctgaagaatctttccgt
aaagcactcgttgaatcaataaaatcgctcccggagcgtgaagctttggtactttcgctc
tattatgatgaagagctaaacttaaaagaaattggtgaggtacttggagttagtgaatct
cgcgtcagccagatactcagccaatctatgcagcggctaagaacaaagttaagttcttgg
actcggaatgactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (15)   
   Pfam (15)   
All databases (26)   

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