KEGG   Vibrio cholerae O1 O395: VC395_2712
Entry
VC395_2712        CDS       T02099                                 
Symbol
vacB
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
vcr  Vibrio cholerae O1 O395
Pathway
vcr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vcr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VC395_2712 (vacB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcr03019]
    VC395_2712 (vacB)
   03016 Transfer RNA biogenesis [BR:vcr03016]
    VC395_2712 (vacB)
Enzymes [BR:vcr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     VC395_2712 (vacB)
Messenger RNA biogenesis [BR:vcr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     VC395_2712 (vacB)
Transfer RNA biogenesis [BR:vcr03016]
 Prokaryotic type
  tRNA degradation factors
   VC395_2712 (vacB)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 RNase_II_C_S1 Rho_RNA_bind UPF0158
Other DBs
NCBI-ProteinID: ACP10698
Position
I:complement(2851303..2853768)
AA seq 821 aa
MSDTTHLDPFADREADNYDNPIPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHH
QMRTLIHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIH
HDILIPNDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQI
PHEWPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGW
RLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKM
YQVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASL
VEKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKE
LIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRN
QDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVA
NVTSFGFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLA
VNLDDRQIDFELVETSRKLRGQGKTAKKRADEARAKAQGKKEAATKGARGKSPTKSELKP
QVEATRRPDSEGRSKPKKTKAPKKRKDQARKKSGKVRDKTK
NT seq 2466 nt   +upstreamnt  +downstreamnt
atgtctgataccacacatcttgatcctttcgctgatcgcgaagccgacaattatgacaat
ccaattccgagtcgtgagtacattctcgaatttttaacccaagccaatgttcccatgaat
cgcaacgatctgttcgaagccctcaaactagaaggcgaagagcaatatgaagggttgcgt
cgtcgcctgcgggcaatggaacgagatggccaactggtgttcacgcgccgtcaatgctat
gccttgccagaaaaactggaaatggtgaaaggctatgtgattggccacaaagacggccac
ggctgggttcgtccagaaggaagcttaaacaaagaaggcgatattttattgccccaccac
cagatgcgtacgctgatccatggtgattttgtcttagtgcagccgagcggtactgataaa
cgaggccgtaaagaagggcgcttagtacgcattctcgaagagcgcaatggccaaattgtc
gggcgtttcttctttgaatacggttactcttatgtggtgccggatgactcacgcattcat
catgacattctgatccccaatgacttacgtgccggcgctcgcatgggcaacgtggtcgtg
attgaaattaccgaccgtggcacgcgtaaccgcggcatgatgggtaaagtcgttgaagtg
ttgggtgaaaacatggccccgggtatggaaacgcaaattgcgattcgtactcaccaaatt
ccccatgaatggcccgcagaagttgagcagcaagtagcgggattgaccgaggaagtacct
gaagaagccaagcaaggccgtgtcgatctacgtgctttgccattagtcacgatcgatggc
gaagatgctcgagatttcgatgatgctgtctattgtgaagcgaaaaaaggcggtggctgg
cgtttatgggtcgcgattgccgacgtgagctattacgtacgtcccgataccgctctcgat
aaagaagcgatcaaccgcggtaactcggtctatttcccatcgcaagttgtcccaatgttg
ccggaagtgctgtcgaacggcctctgttcactcaacccacaagtcgatcgcttgtgcatg
gtgtgtgaaatgaccgtatcggaaacgggtaagctctcgggctacaagcattacgaagcg
gtaatgaactcgcacgctcgcctgacttacaccaaagtgcatgaaatcctcgaaggggat
gaagaactgcgcgagcgttataaagcgctggttcctcatcttgaagagttgcacaaaatg
tatcaggtgctgaaaagtgcacgcgatgagcgtggcgcgattgagtttgaaaccgttgaa
accaaattcatcttcaacgctcagcgcaagattgaaagcattgagcctgttgtacgtaac
gatgcgcataagctgattgaagagtgtatgatcctcgccaacatcgcctctgcctctttg
gtagaaaaagccaaagaagcggcgttgtaccgtgtccatgagccaccaggtgaagaacgt
ctcactggcttccgtgatttcctcggtgagttggggctcgatctctccggtggccttgag
ccatcaccgaccgactacgccaatttaatgaagcaaattggtgaacgtccagataaagag
ctgatccaaaccatgttgctgcgctcgatgaagcaagcggtgtataacgcggataacgcg
ggtcactttggcttggcgttgaaacgttacgcacactttacatcgccaatccgtcgttac
ccggatttgttgctgcatcgtgcgatcaaatatctgatcgcgaagcaagaagggcgcaac
caagaccgttggactccaaccggtggctatcactactccttcgatgacatggacttctac
ggtgagcagtgctccatgactgagcgccgcgctgatgatgcgacgcgcgaagtgtctgac
tggctcaaatgcgagtatatgcaagatcatgtgggtgaagaattagaaggcgtcgtcgcg
aacgtcaccagtttcggcttctttgtccgtctcactgagctgcacattgacggcctggta
cacatttcgactctggctaacgactactaccactacgatccgattggtcagcgtctggtg
ggggaaagttttggtgccatctatcgtcttggtgatgcggtaaaagtaaaagtgttggcg
gtaaaccttgatgatcgccaaattgactttgaattggtcgaaactagtcgtaagctacgc
ggccaaggtaaaaccgccaagaaacgtgccgatgaagctcgagccaaagcgcaaggtaaa
aaagaagcggccactaaaggtgcccgtggcaaatcaccaacgaaatcagagttgaaacca
caggtagaagcgacgcgccgtccagacagtgaaggccgtagcaaaccgaaaaagaccaaa
gcgccgaaaaaacgcaaagaccaagctcgtaagaaaagcggcaaagtacgagataaaacc
aaatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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