KEGG T03666: MS6

Vibrio cholerae O1 El Tor MS6: MS6_1792

Entry

MS6_1792          CDS       T03666

Name

(GenBank) ribonuclease E

K08300

ribonuclease E [EC:3.1.26.12]

Organism

vcs Vibrio cholerae O1 El Tor MS6

Pathway

vcs03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:vcs00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MS6_1792
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcs03019]
    MS6_1792
   03009 Ribosome biogenesis [BR:vcs03009]
    MS6_1792
Enzymes [BR:vcs01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     MS6_1792
Messenger RNA biogenesis [BR:vcs03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     MS6_1792
Ribosome biogenesis [BR:vcs03009]
Prokaryotic type
  rRNA processing factors
   MS6_1792

SSDB

Motif

Pfam:

RNase_E_G RNase_E_G_Thio S1 KH_1

Other DBs

NCBI-ProteinID:

BAP03447

Position

1:2041529..2044678

AA seq 1049 aa
MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE
RHGFLPLKEIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEELEWD
LNVLLKHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEH
IRLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI
NSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLR
EAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVL
RLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFE
VIRVREGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAP
TPKPKAEPQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRER
NDRNNDRRRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQERGERNERNDRNERP
ETERPERQDRRNKRDESKTAKLLEQGRQLAAEAQQEVKAVEPKEEKAAVVKERRQRRKLS
KQIRVKDQLAAEELDNLSTAPVDNAFDAPAPVNLPVTDDFADSAQEDNEQDDQKQRRNRR
SPRHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYDLAPRPQSRHETAEGA
QHVTHVTPTAATAVVESEKVAAPRVLGGVAFPEMAMGKVIVRRETAAVQPEPVVQEPVIT
DVIAETLIAPVEPVVVEATVIEAPVIEESATETAALETVVAKVAEVEEPATISDEVVAQT
TVEVIADKMAEPIKVVKPVTVSATSLTAKAVIQQPYASSPMTKAPGSDDIREVQVNAAPL
RAERYQARGAGSQVARNQASAGMSKPQSF

NT seq 3150 nt +upstreamnt +downstreamnt
atgttaattaacgcaactcaaaaagaagagttgcgtgtcgcgttggtcgatggccaacgt
ctgttcgatctggatattgaaagtccggggcacgaatcgaaaaaagcaaatatctacaaa
ggccgcattacccgcattgaacccagtcttgaagctgcattcgttgactacggtgctgaa
agacacggtttcctccctctcaaagaaatcgctcgtgaatacttccctgatggttatagc
taccaaggtcgtccaaacatcaaagatgtgctgaacgaaggtcaggaagtgatcgtgcaa
atcgagaaagaggagcgcggtagcaaaggtgcagccctaaccacctttatctctctagcg
ggcagctacttagttctgatgccaaataaccctcgtgctggcggtatttctcgtcgtatc
gaaggcgatgagcgcactgaactgaaatcagcactcagctcactagaattgccacaaggt
atgggcttaattgttcgtaccgcaggcgtaggtaaaagcgctgaagagctagagtgggac
ttaaatgtactgcttaagcactggagtgcgattaaacaagcgtctgattcaaaccctgca
cctttccttatccaccaagaaagtaacgtgattgttcgtgcgatccgtgattacttgcgt
cgtgatattggtgaaattcttatcgacagcaacagcatttacgagcgtgctcttgagcat
atccgtttagtgcgcccagatttcgtcaatcgtgtgaaaaaatacgaaggcgaagtaccg
ctgttcagccatttccaaatcgaaagccagattgaatcggctttccaacgtgaagttcgc
ctgccttctggtggttcaatcgttattgacccaaccgaagccttgacttccatcgacatc
aactctgctcgcgcaaccaaaggtggcgatattgaagagaccgctctcaataccaaccta
gaagctgcagatgaaatcgcacgccaattgcgtctgcgtgacctcggtggtcttgtggtg
atcgacttcatcgatatgacccctgttcgccaccagcgtgaagtggaaaaccgtctacgt
gaagcggtgcgtgttgaccgtgctcgcgttcaaattggccgtatttctcgctttggtttg
ctggagatgtcgcgtcaacgtttgagcccttctctggcagaagcaagccatcacatctgt
cctcgttgtaaaggaaccggcgtgattcgtgacaacgaatctttggcactttctgttctg
cgcttaattgaagaagaagcactcaaagacaacacatcgcaagtgcttgcggtggtacct
gtctctatcgcgtcttatctgttaaacgagaagcgtcgctcaatcaatcacattgaaaaa
gcgcagcaagttcgcattactatcgtgccaaattccgatatggaaacaccgcactttgaa
gtgatccgcgtgcgtgaaggtgaagagcaagatgttctctcttacctgattccgaaaaag
ctggaagcgatgaaagaagcggaaggcaaagaagtggtcgatgttgagctcaaaccaaaa
cgtattgaagagccagtactgaaaggttttgcagcgcctgcggaagcggttcctgctcca
acaccaaaacctaaagcagaacctcaacctgttgcagaggtacagcaacctgcgcagcct
ggtttctttagccgtgtgtttaaagcgattgcgagcctattctctgcgacaccggaagcg
gccaaagtagaagcgcctgtaacgcagaatagtgaacaagacaaacctcgtcgtgaacgt
aacgatcgtaataatgatcgtcgtcgtaaccctcgtgacaaaaaccgtcgccgcggtaat
gaggaaaacaacgagcgtaacgataaagagacatcaaacagcaaccgtaagccacaagag
cgcaagccaaagcaagagcgtggtgagcgtaacgaacgtaatgaccgcaatgaacgtcca
gaaaccgagcgtccagaacgtcaagatcgtcgtaataaacgagatgaaagtaaaacggct
aaattgcttgagcaaggtcgccaattagcggctgaagcacaacaagaagttaaagccgtt
gagcctaaagaagagaaagccgcggttgttaaagaacgtcgtcaacgtcgtaagctctcg
aagcaaattcgagtcaaagatcagcttgccgcagaagagttagacaacctgtctacagct
cctgttgacaatgcgttcgacgctccagcgccagttaatctgcctgtaaccgatgatttt
gcggattcggctcaagaggataacgagcaagatgatcagaagcagcgtcgtaatcgccgc
tcgccacgtcatctgcgcgccagcggccagcgccgccgtcgtggtcgtgatcgtcgccct
aacccattccgcctgcgtaaaggtggggttgcctctcctgagatggccatgggtaaagtg
atgcctcgctacgacttagcgccgcgtccacagtcacgccatgaaactgctgaaggtgct
caacatgtgactcatgtaacaccgactgcggcaactgcagtagtagaaagcgaaaaagtg
gcagcgccacgtgtactcggaggcgttgccttcccagaaatggcgatgggtaaagtcatc
gtacgtcgtgaaactgctgcggttcaacctgagccagtagtgcaagagccagtgattact
gacgtgatcgcagagacactcatcgcacccgttgagccggtcgtggttgaagctacagtg
attgaagctccggtaattgaagagtcagcaacagaaactgctgcgctagaaaccgtagtg
gcgaaagtcgctgaagtcgaagagccagccacaatcagtgacgaggttgtcgcacaaacg
acggttgaagtgatcgcagacaaaatggcagaaccaattaaggttgttaagccagtgaca
gtgagtgcaacatcactcaccgcgaaagcggtcatccaacagccgtacgcctcatcgccg
atgactaaagcacctggctcagatgacatccgtgaagtgcaggttaacgccgcgccttta
cgtgctgaacgttaccaagcgcgtggtgcgggtagtcaagtcgcgcgtaatcaagccagt
gcgggcatgagtaagccgcaaagcttctaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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