KEGG   Vibrio cholerae O1 El Tor MS6: MS6_1991
Entry
MS6_1991          CDS       T03666                                 
Name
(GenBank) DNA polymerase III alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
vcs  Vibrio cholerae O1 El Tor MS6
Pathway
vcs03030  DNA replication
vcs03430  Mismatch repair
vcs03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vcs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MS6_1991
   03430 Mismatch repair
    MS6_1991
   03440 Homologous recombination
    MS6_1991
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vcs03032]
    MS6_1991
   03400 DNA repair and recombination proteins [BR:vcs03400]
    MS6_1991
Enzymes [BR:vcs01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     MS6_1991
DNA replication proteins [BR:vcs03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     MS6_1991
DNA repair and recombination proteins [BR:vcs03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     MS6_1991
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 DNA_pol_IIIA_C tRNA_anti-codon
Other DBs
NCBI-ProteinID: BAP03646
Position
1:complement(2257917..2261396)
AA seq 1159 aa
MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC
GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW
LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES
YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL
RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGL
EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPA
LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNL
QDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKG
VGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMA
SVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLY
LTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDD
RSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKFA
RGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARARLTLGTEWRVTPSDT
LLDELKQLLGHDQVELEFN
NT seq 3480 nt   +upstreamnt  +downstreamnt
atgtcagacccaaagttcatccacttacgtatacacagtgatttctctatggtggatggt
ttgtccaaagtcccgccattggtgaaaaaagtggcggcaatgggcatgcccgcaatggcc
ttgaccgatttcaccaacctgtgtggcttggtgaagttttacagcaccgcgcataactgc
ggggttaagccaatcattggcgccgactttactttgcaatcggaagagttcggtgatgag
ctgaccaaactgaccttgcttgctaaaaacaatgtcggttacaaaaacctcaccttattg
atttctaaagcctatttacgcggccatgtccagcatcaacctgtgattgataaagcgtgg
ttggtcgagcatgccgaagggctgattgtgctctcgggaggcaaaagtggcgaagtgggg
cgcgcattactcaaaggcaaccaacaacaagtagaaagatgcattgagttttaccaaact
cactttgccgatcatttctatctagagcttatccgcactggccgtgctgatgaagagagc
tacttacattttgcgctggatgtggcagagcagtacgacttgcccgtcgtggcaaccaac
gaagtggtgttcatcactgaagagtcgtttgaagcccacgaaatccgagtcgcgattcac
gatggttatacgctggaagatccacgccgtccgaaaaattacagtccgaagcagtatctg
cgcagcgaagcggagatgtgtgagctgtttgcagacattccagaagcgttagccaacagt
gtcgagattgccaaacgttgtaacgtgaccgtacgtttgggcgaatatttcctacctaac
ttcccaacgggcgggatggcgattgaagattttctggtgatgaaatctcgcgaagggttg
gaagagcgactcgaatttcttttcccagatccagaagttcgtgccaagcgtcgccctgaa
tatgatgagcgtttgcaagttgagctcgatgtgattaaccagatgggctttcccggatac
ttcttgatcgtgatggagtttatccagtggtcaaaagataacgatattccagtcggtccg
ggacggggctcgggggcgggctcattggtagcgtatgcactgaaaatcaccgaccttgat
ccgctggaatacgatctgctgttcgagcgtttcttgaatccagagcgggtctccatgccc
gacttcgacgtcgatttctgtatggataagcgtgatcaagtaattgatcacgtagcggaa
atgtatggtcgtgatgcggtatcacaaatcatcactttcggtaccatggcggcgaaagcg
gttattcgcgatgtggggcgtgtacttggtcatccgttcggttttgtcgatcgcatttcc
aaattagtgccacccgatccgggtatgacgctcgagaaagcctttatcgccgagcctgca
ctgcaagagctgtatgacgcggatgaggaagtcaaagagctgatcgacaagtgtcgaatt
ctggaaggctgtacccgtaacgctggtaaacacgctgggggcgtggtgatttcgcccact
gccatcactgactttgcgccgatttactgtgatgcggaaggcaacttcccggttactcag
ttcgataagaacgatgtggaaactgccggtctggtcaaatttgacttcttggggctgcgt
acccttaccattattgactgggctttgggcttagtgaacccgcgtttgaaaaaggcgggc
aaaccccccgtgcggattgaagcgatcccgctcgacgatgcgcgctctttccgtaacctg
caagatgccaaaaccaccgcggtattccagctcgaatcgcgcggtatgaaagagctgatt
aagcgactgcaacccgactgttttgaagacatcatcgctctggtggcgctgtttcgtccg
gggccgttgcaatccggcatggtggataactttatcgaccgtaagcatggccgagaagcc
atctcttatccggatgaaaagtggcaacatgaatcgctcaaagagatcctagaaccgacc
tacggcatcatcctctatcaggagcaggtgatgcagatcgcgcaggtactgtcgggttac
accttgggtggggcagacatgctgcgccgtgcaatgggtaagaaaaagccagaagaaatg
gctaagcagcgcgctgtgttccaagaaggggcggagaaaaatggcgtcgatggtgagttg
gcgatgaaaatcttcgatctggtggaaaaattcgccggatacggatttaacaaatcgcac
tctgccgcttatgcgctggtttcctaccaaaccttatggttgaaaacccactatccagcc
gagtttatggcggcggtaatgaccgcggatatggacaacacggaaaaagtggttggccta
gtggatgagtgtaaaaacatgggattgaccgtgttgccaccggacattaactcgggtctt
tatcgctttaacgtcgatgacaacggcgcgattgtttatggtattggcgcaattaaaggg
gtgggtgaaggtccgattgaagcgattttggaagcgcgcaacaaagggggatatttcaaa
gatctgtttgatttctgcgcgcggattgatctgaaaaaggtcaacaaacgggtaattgaa
aaactgatcttggctggcgccctggatagattaggcccgcatcgcgcagccatgatggcc
tcagtggatgatgcggtgcgtgcagcaagccaacatcaccaagcggaagcgtttggacaa
gcggatatgttcggtgtgctcacggatgcgccagaagaagtcgagcagaaatacacgcaa
gtgccagaatggccagaaaaagtgcgtttggaaggggagcgcgagacgcttgggctctat
ctcaccggccatccggtggatgaatacctgaaagagctcaccaaatacaccagttgccgt
ttgaatgaagccgcaccaacccggcgtgatcaatccttaaccgttgccggattggtgatt
gcagcgcgggtgatgaccaccaaacgtggcacgcgaattggtttaatgactttagatgac
cgctcgggccgtatggaagtgatgctttactcggaagcactcgatcggtatgcagaatgg
ttagaaaaagataaaattctggtggtttccggacaggtcagctttgatgacttcaatggc
ggacttaaaatgtcggcgcgcgaggtcatggacttgggcagcgcgcgtgaaaaatttgcc
cgcggtttatcgatctcgattttacagtcgcagattgatcaacaattttttgagcgtttt
agtcacatactggaacctcaccgcgcaggaaccgtacctgtcaatgtatactaccagcgc
cctgatgcgcgagcgcgcctgacgttaggcacagagtggcgagtcacgccaagcgataca
ttgttagacgaattaaagcagctacttggtcatgatcaggtagaactcgaatttaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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