KEGG   Vibrio coralliilyticus RE98: IX92_14690
Entry
IX92_14690        CDS       T03444                                 
Name
(GenBank) exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
vcy  Vibrio coralliilyticus RE98
Pathway
vcy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vcy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IX92_14690
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcy03019]
    IX92_14690
   03016 Transfer RNA biogenesis [BR:vcy03016]
    IX92_14690
Enzymes [BR:vcy01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     IX92_14690
Messenger RNA biogenesis [BR:vcy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     IX92_14690
Transfer RNA biogenesis [BR:vcy03016]
 Prokaryotic type
  tRNA degradation factors
   IX92_14690
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 RNase_II_C_S1 Rho_RNA_bind
Other DBs
NCBI-ProteinID: AIW20199
UniProt: A0A7Y4DWP5
Position
1:complement(3136567..3139032)
AA seq 821 aa
MSESTPNDPFAARESENYENPVPSREFILEFLEQAGVPLNRNDLFEALHLEGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSVGKDNDVVLPHH
QMKSVLHGDYVLVQPTQNSKRGRKEGRLVRVLEERQTQIVGRFFMEYGYSYVVPDDSRIS
QDILIPNELRAGARMGNVVVIEITERGSRSRGMMGKVIEVLGENMAPGMETQIAIRTHQI
PHEWPEEVDKQIEGLGEEVPEEAKQGRVDLRELSLVTIDGEDARDFDDAVYCEAKKSGGW
RLWVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTISESGKLSGYKHYEAVMNSHARLTYNKVHHILEGDEELRQRYQPLVPHLEELHKM
YKVLKHARDNRGAIEFETVETKFIFNTERKIDSIEPVIRNDAHKIIEECMILANIASASL
VEKAKEPALYRIHESPGEQRLTGFRDFLSELGLDLKGGLEPSPTDYADLVRQIGQRQDKE
LIQTMLLRSMKQAVYNADNCGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKENGTL
KDRWTPTGGFHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVIA
NVTGFGFFVRLTELHIDGLVHISTLANDYYQFDPIGQRLIGESFGAIYRLGDAVKVKVLS
VNLDDRQIDFELVETSRKLRGKGKTAKKRAAEAQKKAKAKKNAAANGRRSVDKAKPMVEP
TKRPDSGQEEGKGSKASKKPSDKARKKKTRNKAKKARGKKQ
NT seq 2466 nt   +upstreamnt  +downstreamnt
atgtcagaaagcaccccaaacgatccatttgcagctcgcgaatcagagaactacgaaaac
cctgttccaagtcgagagttcattcttgaatttcttgaacaagctggtgttcctttgaat
cgcaatgatctgtttgaagctctacatctagaaggtgaagagcagtatgaaggtttacgc
cgcagattaagagcgatggagcgtgacggtcaactggtgttcacgcgtcgtcagtgctat
gccttgccagaaaaactcgaaatggtgaaaggttacgttatcggacacaaagatggtcat
ggctgggtgcgacctgaagggagtgtgggcaaagataacgatgtagtactgcctcaccat
cagatgaaaagtgttctgcatggtgactatgttttagtccagccaacacagaactcgaag
cgaggaagaaaagaaggtcgtttagttcgggtacttgaggagcgtcagacgcaaatcgtg
ggtcgcttctttatggagtatggctattcctacgttgtgccagatgactctcgtatcagc
caagatattctcatccccaatgagctgcgtgcaggggctcgaatgggcaatgtcgtcgtg
attgaaattaccgaacgtggttctcgatcgcgtggcatgatgggtaaagttatagaagtt
ctgggcgagaatatggcgccgggaatggaaacacagatcgcgattcgcactcaccaaatt
cctcacgagtggcctgaagaagtggataagcaaatcgaagggctaggtgaagaagtgcca
gaagaggccaagcaaggtcgtgtcgatttgcgtgaactttcgcttgtcactattgatggt
gaagatgcgcgtgactttgatgatgcggtttattgtgaagcgaagaaaagcggtggctgg
cgcctttgggttgcgattgccgatgttagttactacgtccgcccagattctgcactggat
aaggaagccatcaatcgcggcaactcggtgtatttcccgtcacaagtggtgccaatgcta
ccggaagtgctgtctaacggcttgtgttcgctaaacccacaagttgaccgcctgtgtatg
gtgtgtgaaatgaccatttctgagtcaggtaagctctccggatacaagcattacgaagca
gtgatgaactcgcatgcgcgcctgacctacaacaaagtgcaccatattcttgaaggtgac
gaagaactgcgtcagcgataccaacctttggttcctcatcttgaagaactgcacaagatg
tacaaagtacttaagcatgcgcgggacaaccgtggcgccattgagtttgaaaccgttgaa
accaagttcatcttcaatacagagcgtaagattgacagtatcgagccagtgattcgcaat
gacgctcataagatcattgaagagtgtatgattctggctaacatcgcatcagcgtctttg
gttgaaaaagctaaagaaccagcactataccgtattcacgaatctccaggcgaacagcgt
ttgacggggttccgcgattttctcagtgagcttgggttagacctgaaaggtggcttggaa
ccatcaccaacagattacgccgatttagtcagacagattggccaacgccaagataaagaa
ttgatccagactatgctgcttcgctcaatgaagcaggcggtgtacaacgccgataactgt
ggtcactttggtctagcgttgaaacgctatgcgcactttacttcacctattcgtcgttac
ccggaccttttgcttcatcgtgcgatcaaatatttaatcgcaaaagagaatggaacgctg
aaagaccgttggacacctacgggcggcttccattattcctttgatgacatggatttctac
ggtgagcagtgttcgatgacggaacgtcgtgccgatgatgcgacgcgggaagtgtctgat
tggctcaaatgtgagtacatgcaagatcatgtaggcgaagagctggaaggtgtgattgct
aatgtgactggttttggcttctttgtccgattaaccgaactgcatattgacgggctggtg
catatttctacactggcaaacgactactaccagttcgacccaattggacagcgattgatc
ggtgagagcttcggtgccatctatcgtctaggtgatgcagtgaaagtgaaagtgctgtct
gtaaatctagatgatcgacaaattgactttgaattagtcgaaactagtcgtaagctacgc
ggcaaaggaaaaacagccaaaaaacgcgcagccgaggcacagaaaaaagctaaggcgaaa
aaaaacgcggcagcgaatggtcgacgttcagtagataaagccaagcctatggtcgaacca
actaaacgcccggatagcggccaagaagaaggtaaaggtagtaaagcctcgaagaaacct
tcagataaagcgcgtaagaaaaaaacacgtaataaagcgaagaaagcgcgtggtaaaaaa
cagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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