KEGG   Verticillium dahliae: VDAG_03521
Entry
VDAG_03521        CDS       T03450                                 
Name
(RefSeq) transcription initiation factor IIB
  KO
K03124  transcription initiation factor TFIIB
Organism
vda  Verticillium dahliae
Pathway
vda03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:vda00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    VDAG_03521
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vda03021]
    VDAG_03521
Transcription machinery [BR:vda03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     VDAG_03521
 Prokaryotic type
  Archaeal type
    TFB
     VDAG_03521
SSDB
Motif
Pfam: TFIIB TF_Zn_Ribbon Cyclin_C PARP_reg Sigma70_r4_2
Other DBs
NCBI-GeneID: 20704984
NCBI-ProteinID: XP_009655681
UniProt: G2WZS9
Position
6
AA seq 352 aa
MLNPAGAPALDEHGNAIGDFKQDLNIIVECPDCREQPPNLVEEFSSGDMVCGSCGLVVGE
RIIDTRSEWRTFANDDQGNDDPSRVGDAGNPLLDGAQLETSIAFSEGRDHKNLARIQNKS
QTDKNTKAIGSAFREISAFTDSINLGKNVADGAKHIYKLCHDHSFMKGKPQEALVAGCIF
IACRQAGVGRTFREIYQVTNVSKKEIGRVFKALESFLQKIKETNPGGNAIQDLSGYKAST
STNAEDLCTRFTSQLPFRQSQKIENVSRALARKTVSVSELAGRSPLSVSAACIYMASHLM
EEAKTSKDIAAVAGVSDGTIKTAYKFLYQARERLIEKEWGVSQKAIDSLPVN
NT seq 1059 nt   +upstreamnt  +downstreamnt
atgttgaatcccgccggagcgccagctctagacgagcatggcaacgccatcggcgacttc
aagcaggacctcaacatcattgtagagtgtcctgactgccgcgagcagcctcccaatctg
gtggaggagttctcttctggcgacatggtttgtggctcttgcggcctcgttgtgggcgag
cgcatcattgacacccgctctgaatggcgtacgttcgccaatgacgaccagggcaacgac
gacccgtctcgtgtcggtgacgctggcaaccctctgctcgacggtgcccagctcgagacg
agcattgccttttctgagggcagggaccataagaaccttgcgcgtatccagaacaagtcg
caaacagataagaacaccaaggccatcggttccgctttccgcgagatcagcgcctttact
gacagcatcaatttgggaaagaacgtggcagacggtgccaagcacatctacaaactttgc
cacgaccacagctttatgaaggggaaaccccaggaagctctcgtggccggctgcattttc
attgcatgccgtcaggcaggtgttggtcgtactttccgagaaatctaccaagttaccaac
gtctctaagaaggagatcggaagggtctttaaagctctggagtcattcctgcaaaagatt
aaagagaccaaccctggcggcaatgccattcaagatcttagcggctacaaggcctcaacg
tcgaccaatgccgaagatctctgcactcgtttcacttcgcagctgccattcaggcagtcg
cagaagattgagaacgtgtcgcgcgctctcgctcgtaagacggtcagcgtgtccgaactt
gcgggtcgttcgccactgtccgtctctgcggcctgcatctacatggcgtcacaccttatg
gaggaggctaagacgtccaaggacattgcagcggtagccggtgttagcgacggcactatc
aaaacagcgtacaagttcttgtaccaagctcgcgagcgtctcatcgagaaggaatggggc
gtaagtcagaaggccattgacagcctgccggtgaactag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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