KEGG   Verticillium dahliae: VDAG_03543
Entry
VDAG_03543        CDS       T03450                                 
Name
(RefSeq) ATP-dependent rRNA helicase rrp-3
  KO
K14777  ATP-dependent RNA helicase DDX47/RRP3 [EC:5.6.2.7]
Organism
vda  Verticillium dahliae
Brite
KEGG Orthology (KO) [BR:vda00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vda03009]
    VDAG_03543
Enzymes [BR:vda01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     VDAG_03543
Ribosome biogenesis [BR:vda03009]
 Eukaryotic type
  90S particles
   Helicases
    VDAG_03543
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Rpf1_C AAA_22
Other DBs
NCBI-GeneID: 20705006
NCBI-ProteinID: XP_009655703
UniProt: G2WZV1
Position
6
AA seq 486 aa
MTDAHSQKRRKTKHGAAAAVKPAAAISKPAPRKEQSPEPAPPASTTDEAAADQDDAPVAK
KSFADLGVVESLVEATEALGYKHPTPIQEKSIPLALEGRDVIGLAETGSGKTAAFALPVL
QALLEKPSGLFAVVMAPTRELAAQIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGKKP
HVVVATPGRLLDHLEKTKGFSLRSLKYLVLDEADRLLDMDFGPSIDKILKFIPRERHTYL
FSATMSSKVESLQRASLKDPARVSVQSNGYQVVSTLLQNYLFIPHALKDVYCVHLINSFI
GQTTIVFLRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRAGSRDILVATDV
AARGLDIPNVDVVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVTQYDLEIWLRIEASM
GKKLDEFPTEKDEVMVFQARVEEAQRHARIEMKHLMENRGKKGAVLKGKFVGDSKRRHDG
MDADEG
NT seq 1461 nt   +upstreamnt  +downstreamnt
atgaccgacgctcactcacagaagcggcgaaaaaccaagcacggcgcggctgctgctgtt
aagcctgctgctgccatttccaagcccgcgccgagaaaagaacaatcgcccgagcccgcc
ccgcctgcctcaacgaccgacgaggcggcggcggaccaagatgacgcgccagtagccaag
aagagcttcgccgacctgggtgtcgtcgaatctctcgtcgaagccaccgaagctctcggc
tacaagcacccgacccccatccaggagaagagcattcctctcgctctcgaaggccgcgat
gtcattggcctcgcggagacaggttcgggaaagacggctgctttcgccctgcctgtacta
caagctcttctcgagaagccgtccggcctcttcgctgttgtcatggccccgactcgtgaa
ctggcagcccagattgcgcagaccttcgaggccctcggctccctgatcaacctgcgatgc
gccgtcattgtcggtggtctggacatggtgcaacaggccatcgcgctgggaaagaaacct
cacgtcgttgttgcaacgccgggtcgactgctggatcatctcgaaaagacgaagggtttt
tctcttcgctcgctcaagtatctcgtcctcgatgaagcggatcgcttgctcgacatggac
ttcggcccctcaatcgacaagattctcaagttcattcctcgcgaacgccacacttatctg
ttctccgcaacaatgagctccaaggttgagtctctccagcgtgccagtctgaaggatcct
gcccgtgtctcggttcagtccaacggataccaggtcgtttcgacgctgctgcagaactat
ctttttatcccacatgcgctgaaggatgtctactgcgtccatctcatcaactccttcatc
gggcagaccacaattgtcttcctccgtacagttcacgacacacagcgccttgccatcctt
cttcgaaccctaggcttctccgcccttcccctgcatggccagctttctcaatccgcccgt
cttggagccctcaacaagttccgcgctggctctcgcgacatccttgtcgctactgacgtc
gccgctcgtggtcttgatattcccaatgttgatgtcgtcatcaactacgaccttcctcag
gatagtaaaacttatattcatcgtgtcggtcgtactgctcgtgctggcaagtcgggtcgc
gcgctcagtctcgtcacgcaatacgatctcgagatttggcttcgcatcgaggcgtccatg
gggaagaagctcgacgaatttcctacggagaaggacgaagtcatggtgttccaggcacgg
gtcgaggaggcacagaggcacgcgaggattgagatgaagcacctgatggagaaccgcggc
aagaagggagccgttctgaagggcaaatttgttggtgattcgaaaaggaggcacgatggc
atggatgccgacgagggctga

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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