KEGG   Verticillium dahliae: VDAG_04392
Entry
VDAG_04392        CDS       T03450                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
vda  Verticillium dahliae
Pathway
vda03020  RNA polymerase
vda03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vda00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    VDAG_04392
  09124 Replication and repair
   03420 Nucleotide excision repair
    VDAG_04392
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vda03021]
    VDAG_04392
   03019 Messenger RNA biogenesis [BR:vda03019]
    VDAG_04392
   03400 DNA repair and recombination proteins [BR:vda03400]
    VDAG_04392
Transcription machinery [BR:vda03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     VDAG_04392
Messenger RNA biogenesis [BR:vda03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     VDAG_04392
DNA repair and recombination proteins [BR:vda03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      VDAG_04392
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 20705855
NCBI-ProteinID: XP_009649134
UniProt: G2X268
Position
1
AA seq 171 aa
MFFLKNMERRVTLHPSYFGRNMHDLVTSKLLKDVEGTFAGSYYVISIMDTFDISEGKILP
GSGLAEFNVGYRAVVWRPFKGETVDAVVYSVNHQGFFAQAGPLRLFVSAHLIPSEIKWDP
NATPPQFTDNDDTIIEPGTHVRVKVIGTRAEVSEMWAIGSIKEDYLGCLQD
NT seq 516 nt   +upstreamnt  +downstreamnt
atgttcttcctcaagaacatggagcgcagggtcaccctgcacccttcgtactttgggcgc
aacatgcacgacttggttacgagcaagctactgaaggatgtcgagggcacctttgccgga
agctactacgtcatctccatcatggacacgtttgatatctccgagggaaagattttgcct
ggtagtggtctcgccgagttcaacgtcgggtaccgtgcggtcgtgtggaggcccttcaag
ggcgagacggttgatgccgttgtctactccgtcaaccatcagggcttctttgctcaggct
ggtcctctgcgactcttcgtgtctgctcacttgattccttcggaaatcaagtgggatccc
aacgcgacgccgccacagttcacggacaacgatgacaccatcatcgagcccggaacgcac
gtgcgcgtcaaggttatcggtactcgtgccgaagtcagcgagatgtgggccattggtagt
atcaaggaggattaccttggctgccttcaggattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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