KEGG   Verticillium dahliae: VDAG_07989
Entry
VDAG_07989        CDS       T03450                                 
Name
(RefSeq) Clp1 protein
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
vda  Verticillium dahliae
Pathway
vda03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:vda00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    VDAG_07989
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vda03019]
    VDAG_07989
Enzymes [BR:vda01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     VDAG_07989
Messenger RNA biogenesis [BR:vda03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     VDAG_07989
SSDB
Motif
Pfam: CLP1_P CLP1_N Clp1 KTI12 AAA_16 AAA_24 MMR_HSR1 ATP_bind_1 AAA AAA_18 nSTAND3 Sigma54_activat AAA_11 TniB SRPRB
Other DBs
NCBI-GeneID: 20709452
NCBI-ProteinID: XP_009651050
UniProt: G2XCV7
Position
2
AA seq 459 aa
MSIPGLGLETFAAQPAAPTGASTTRVIKLDQLSEWRFEVGFSSEVEVKLVAGVAEKDGTE
LAAHHVYRFSGVKTKILTFMGCQLEVTGTCDDEFLADFPKPTDSPMNSYLNLHFKLHALR
QHAAAAKAEGPRVMICGPPNTGKTSVARTLTSYATRLEGQPLMVNMDPKEGMLSLPGTLS
ASALASILDIEAVDGWGTTPTSGPSQVPVKLPLAFYYGRTSPAEDPKKYLELVSRLAGSV
TSRFTQDPDVKSSGMIIDTPSMDEKSKASMDVLVHIAEELSANIILVLGSSRVNTELSRR
FANERTGLGEQIHVIHLDRSEGVATRDEGYMQQACEASIREYFFGNIGRTLSPATQQVDF
DSLTIYRLGDYSVYGNGDEGLMLSEPSGLMAHWTLAVMYASTKDSPETIRNANVMGYVYV
AEVDKERRKMKVLAPVSGRLGDRPLLWGKWPEPFVNLLG
NT seq 1380 nt   +upstreamnt  +downstreamnt
atgtctattccaggacttggcctggaaaccttcgctgctcagccagcagctcccaccggc
gcctccactactcgggtcatcaagctcgaccagctgtctgaatggcgattcgaggttggc
ttcagctccgaagtcgaagtgaagcttgttgccggcgttgcagaaaaagatggcacggag
ctcgccgcacaccacgtctatcgcttcagcggtgtcaagacgaaaatcctcacattcatg
ggctgccagctcgaagttactggcacctgcgatgacgagttcctcgcagactttccgaaa
cctaccgactcaccgatgaattcttacctcaatctccacttcaaactacatgctcttcga
cagcatgcggcagcggcgaaagcagaaggaccgcgcgttatgatctgcgggcctccgaac
acaggcaagacaagtgtggcgcggacattgacaagctacgctacgcgactggagggacaa
cctttgatggtcaacatggatcccaaagagggcatgctgtctctgccaggcacactgagt
gccagcgctctggcttccatcctggatatcgaggctgtagacggatggggcaccacgccc
accagcgggcccagtcaggtacctgtcaagctacctctagcattctactacggacgaaca
agcccggccgaagaccctaagaaataccttgaactcgtaagccgcttggcaggctctgtg
acttctagattcacccaagatcccgacgtcaagagctctggcatgatcatcgacacgcct
agcatggatgaaaagagtaaagccagcatggatgttctcgtgcatattgccgaagagcta
tcggcaaacatcatcctcgtattgggttcttcacgcgtcaacacagagctgagcaggcgg
ttcgccaatgaacgtaccggcctcggagaacaaatccatgttattcatctcgacagatcc
gagggagtggccacacgagatgaagggtacatgcaacaagcatgtgaggcttcgatcaga
gagtactttttcggcaacattgggcgaactcttagtcctgcgactcagcaggtcgatttt
gacagcctcaccatttacaggctgggtgactactcggtgtacggcaacggagacgagggc
ctcatgctgtccgagccatcaggcctcatggcacattggactttagccgtcatgtacgcc
tctacaaaggattcgcctgagaccattcgcaacgcgaacgtcatggggtatgtttacgtc
gccgaagttgacaaagagaggcgcaaaatgaaagttctcgcgccagtcagcggtcgactg
ggtgatcgccctctgctctggggcaagtggccggaaccattcgtcaacttgttgggttag

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