KEGG T05848: NCTC11831

Veillonella dispar: NCTC11831_00977

Entry

NCTC11831_00977   CDS       T05848

Symbol

topA

Name

(GenBank) DNA topoisomerase 1

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

vdn Veillonella dispar

Brite

KEGG Orthology (KO) [BR:vdn00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vdn03032]
    NCTC11831_00977 (topA)
   03400 DNA repair and recombination proteins [BR:vdn03400]
    NCTC11831_00977 (topA)
Enzymes [BR:vdn01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     NCTC11831_00977 (topA)
DNA replication proteins [BR:vdn03032]
Prokaryotic type
  DNA Topoisomerases
   NCTC11831_00977 (topA)
DNA repair and recombination proteins [BR:vdn03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      NCTC11831_00977 (topA)

SSDB

Motif

Pfam:

Topoisom_bac zf-C4_Topoisom Toprim YyzF

Other DBs

NCBI-ProteinID:

VEG93543

Position

1:1034385..1036784

AA seq 799 aa
MSIKRSIVIGEPKVASTSKDTKKKSTKKESTTIKRKVAKEALTPMGIVRDKSVLQTSVPP
EQREPRVYNPDGKVLVIVESPAKSKTIEKFLGPNYVVKASMGHLRDLPKSQMGIDIEHDF
TPRYSNLVTRKKVIDELVSYADESSAVLLATDPDREGEAISWHLAYILNVDPTSTCRITF
NEITKNAVAEALESPRTIDMNMVDAQQARRVLDRIVGYKLSPLLWKKVCKGLSAGRVQSV
AVRLICEREREIQAFVPQEYWTIEGNFETPKKEAFTAELTHIKGEKIDITTESEAQAVVD
AIGGADAVVTNIEKRKRSRKAAPPFTTSTLQQDGVRKLNFGAKRTMMIAQHLYEGLEIGS
YGHVGLITYMRTDSTRISKEMQVMAKDYIIHNYGEDYYPSKPNMYGAKGSAQDAHEAIRP
TSLELTPKMVEPFLSRDELKLYTLIWNRFMASQMAPQQNESTTIELTVHDDYTFKATGSR
VIFPGFSAVYEDAKKEDAPQLPALKKNDAAHTVEVLPEQHFTQPPPRYSEASLIKTLEEL
GIGRPSTYAPILDTIVSRNYVENTNKQFVPTELGFVVVDFLIAYFEKIINTGFTRDLEEE
LDAIASGKDTYLKVLSDFYEVFAKELEDASDVDRIEIASMESDETCDLCHSPMVYKFGRY
GKFLACSNFPECKNTKPITVGTGVTCPKCKEGEIVERKSRRGRLFYGCNRYPQCDFTLWD
KPTHEFCDTCGSIMVEKTYKNGTTKKFCSNEACPTRPPKKTRKKKSEASEETVKESKETK
ESKNSKKSSKAKKEETTVE

NT seq 2400 nt +upstreamnt +downstreamnt
ttgtccattaaacgatcaatcgttattggcgagccaaaagtagctagtactagtaaagat
actaaaaagaaaagtactaagaaagagagtactacgataaagcgtaaggttgctaaagaa
gcccttactcccatgggaattgtacgagataaatctgtactacaaacgtccgtgccacca
gagcaacgggaaccacgcgtatataatcctgatggcaaagtattggttatcgtagagtct
cctgctaaatctaaaacaattgaaaaattcttaggccctaactatgttgtaaaggcgagt
atgggccacttacgagatttgccaaagtctcaaatgggcatcgatatcgaacatgatttc
acgccccgttatagcaatttggtaactcgtaaaaaggttattgatgaactcgtttcctac
gccgatgaaagtagtgccgtattgctcgcaactgaccctgaccgcgaaggggaagctatt
tcttggcatttagcgtacattctaaatgtagatccaacgtctacatgtcgtattacgttc
aatgagattactaaaaatgccgtagcagaggccttagaatctccacgtactatcgatatg
aacatggttgatgcccaacaagcacgccgtgtattagaccgtatcgtaggctataaattg
agtcctttattatggaaaaaggtttgtaaaggtctcagtgcaggtcgtgtgcaatccgtt
gcagttcgacttatctgtgaaagagagcgagaaattcaagctttcgtgccacaagaatac
tggactattgaaggcaattttgaaacgcctaaaaaagaggctttcacagcagaattgact
catattaaaggtgagaaaatcgatattactactgaaagtgaagcgcaagccgtagtagat
gctattggcggagccgatgcagtagtgacaaatattgaaaagcgcaaacgttctcgtaaa
gcggcacctccctttacaacgtctacgttgcaacaggatggtgttcgtaagttgaacttt
ggtgcaaagcgtaccatgatgattgctcaacatctttacgaaggtcttgaaatcggttcc
tatggtcacgtaggtttgattacgtacatgcgtacagactctacgcgtatctctaaagag
atgcaggtcatggctaaggattatattattcataactatggtgaagattattatccttct
aaacctaatatgtacggtgcaaaaggttctgctcaagatgcccatgaagcaattcgccct
acatctttagagttaacacctaaaatggtagagcccttcttgagtcgtgatgagcttaag
ttatatacattgatttggaatcgttttatggcgagccaaatggcaccacaacaaaatgaa
tctacaaccattgagttgacggttcatgatgattacacatttaaagcgacaggatctcgc
gtaatcttcccaggttttagtgctgtctatgaagatgcgaaaaaagaggatgctcctcaa
ttgcctgcgcttaaaaagaatgatgcagctcatacggtagaggtattgcctgaacaacat
ttcacgcaaccacctccacgttactctgaggcgagcctcatcaaaacattggaagagctc
ggtattggtcgtccaagtacttacgctccaattctagatacaatcgtaagccgtaactat
gtagaaaatacgaataaacaattcgtacctacagagttaggctttgtagtggtagatttc
ttgatagcgtactttgaaaaaatcatcaatacaggttttactcgtgatctagaagaagaa
ctcgatgctattgcatctggtaaggatacatatctaaaggtattgtctgatttctatgaa
gtattcgctaaagagctagaagatgcgagcgatgtagatcgcattgaaattgcatctatg
gaaagtgacgaaacgtgcgatctctgtcatagtccaatggtatataaatttggtcgctat
ggtaagttccttgcatgttctaacttcccagaatgtaaaaacactaaacctattacggta
gggacaggtgtaacttgccctaaatgtaaagaaggggaaatcgtagaacgtaagtctcgt
cgaggacgtttgttctatggttgtaaccgttatccacaatgtgatttcacattatgggat
aaaccaacccatgaattctgtgatacatgtggttctattatggttgaaaagacatataaa
aatgggacgactaagaaattctgttccaatgaagcatgtccaactagacctccaaagaaa
actagaaagaaaaagagcgaagctagtgaagaaactgtaaaagaatctaaagaaactaaa
gagtctaagaattctaaaaaatctagcaaagctaaaaaagaggaaacaacagttgaataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (4)   
   Pfam (4)   
All databases (12)   

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