KEGG   Vollenhovia emeryi: 105558636
Entry
105558636         CDS       T06016                                 
Name
(RefSeq) DNA ligase 4 isoform X1
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
vem  Vollenhovia emeryi
Pathway
vem03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:vem00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    105558636
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vem03400]
    105558636
Enzymes [BR:vem01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     105558636
DNA repair and recombination proteins [BR:vem03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     105558636
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT DNA_ligase_IV DNA_ligase_A_C BRCT_2 RNA_ligase BRCT_3 mRNA_cap_enzyme LIG3_BRCT
Other DBs
NCBI-GeneID: 105558636
NCBI-ProteinID: XP_011861813
Position
Unknown
AA seq 899 aa
MATDLEAKIEFKQLCVTLEGIAKAREAKKKEQILQKFITECQSIGNKLKVEYPESNVSLY
PILRLILPHLERQRGPHNLKQASLTKLYANVYGFARNSDSYNKLANYREHTSGEFMGNDF
ADRAYCVLDKKLPRNSSGFTIARINTFLDGISGKSVTMQQKVETFRVLFRQITGFEMKWL
TRIVLKDLRLGIGTQKILHIYHPDANDKFLVTNDLRDICDQLYDPKVKLKRGIQLFSHFK
PMLLERCNVENIDKLFRGNNLYYVQTKYDGERSQLHMKDGMFKYFTRRGFDITNNSGYGE
TGSSGFLTAVFTRRLNPNCHSFILDGELMAWHKEKKMFSTKGMNIDVKHLSANSRHQPCF
VAFDVILHNNVLLVDTPYEERLKLLTENRIFTEEEGSLIVSRSTLVSNREELLEAFNTCL
RDDEEGLVVKKCNMKYKPNIRDGGGGYKIKAEYSDNLIQDIDLIILGGYYGEGKYAGRIK
SFMMGVAASPASNEGANPSQFLAISSVSSGIGDEMLRHLETKLAPYWIKEHPENVEGPKR
HQPDVWIHPEHSIILTIRATEMVRSNEYPTGYSLRFPRVTNARTDKPWYNPCTTCELLSL
VKGGKMIQKLTKREATLCDIDQASVPKLRKTTSRRKSMERDVYSKRVVPLTRLLDGKEIC
VINGTDESPKEQIEQILQQHSAKIVQNPMNTTFCVIVGNDKTMRGKEVINSGRYDVVTLD
WFKRLVSRSDWATFDDFLPWELLCSRDITNHKVAENYDEYYDNFTVDADEESLKRSFGRI
ARSNIFELSADKQFTIEQEREMDEQLFGSTSPYSLFRDIIGFFENQSCCAKYKFRFMSGT
VKDNIDDSVTHAFVEDTSGTSIVVKARERKHIQIVKCKWIEKCFQNGRLCEITDYLVDY
NT seq 2700 nt   +upstreamnt  +downstreamnt
atggccactgatttagaggccaagattgaatttaaacaattgtgcgttacattggagggt
attgccaaggcacgtgaagcaaaaaagaaggagcaaattttgcaaaagtttatcaccgag
tgtcaaagtatcggcaacaaactgaaagtagaatatcctgaatcgaacgtatcgctctat
cccatactgagattaatcttgccccatcttgaacgacagcgtggaccacataatttgaag
caagcttcgctgacgaagctttacgctaatgtatatggctttgcacgaaatagcgacagt
tataacaagttggcaaattaccgagaacacacgtcgggcgaatttatgggaaatgatttc
gctgatcgagcttactgcgtattggataaaaagttgcctcggaacagtagcggattcacg
atcgcacggatcaacacgttcctcgatggtatctctgggaagagcgtaacgatgcaacag
aaagtcgaaacctttagagtactttttcgacagattacgggattcgagatgaaatggctg
acgcgtatcgtccttaaagatttacgacttggtataggcacgcaaaaaatactgcacatc
tatcatccagatgcgaatgacaaattcctcgtgacgaatgatctacgcgacatttgtgac
cagttgtacgatcctaaggtgaaattaaaacgcggcatacaattattctcgcattttaaa
cctatgctcttggagagatgcaacgtcgagaatatcgacaagttatttcgaggcaacaac
ttgtactacgtacaaactaaatacgacggcgagaggtcgcaactccatatgaaggatgga
atgtttaaatactttacgcgtagagggttcgatattacaaacaattctggatacggagaa
accggatcttcgggcttcttaaccgcggtgtttacgcggcgtcttaatccgaattgtcat
tcctttatactggatggagaattaatggcttggcataaagagaaaaagatgtttagtaca
aaaggtatgaatatcgatgtcaaacatttgtcggcgaacagccgccatcagccgtgtttc
gtcgcgtttgacgtcattctgcacaataacgtcttgctcgttgatacaccttacgaagag
agattaaaacttctcaccgaaaaccgtatattcaccgaagaggaaggttctttaatcgtg
tctcgatctactttagtttcaaacagggaggagttgctagaagcattcaatacatgtcta
cgtgatgacgaggaaggacttgtcgttaagaaatgtaacatgaaatataaaccaaatatt
cgagatggcggcggtggttataagattaaagcagagtattccgacaatttaatacaagat
atagacctcattatacttggcggttattacggggagggtaaatatgcaggaagaatcaag
agttttatgatgggcgttgccgcgtcgccagcgagcaacgagggggcaaatccgtcgcaa
tttctcgccatctcatccgtgagcagtggaataggagatgaaatgttgcgtcatcttgaa
acaaaacttgcaccgtattggatcaaggaacatcctgaaaatgtcgagggtcccaagaga
catcagccggatgtatggattcatccagagcattccatcattttaacgatacgagcgacc
gaaatggtacgcagcaatgaatatccaactggatacagtttacgatttcctagagttacg
aatgcgaggacggataagccatggtacaatccgtgcaccacttgcgaactcttgtcgttg
gtcaaaggtggaaaaatgatccaaaagttaaccaagcgagaagctactttatgcgatatc
gatcaagcgtcagtccctaaattacgaaaaacgacaagtcgaaggaaatcgatggaacgt
gacgtgtacagcaagcgagtggtgccactcacgcgactattggacggaaaagaaatttgc
gtgattaatggtaccgatgaatcaccgaaagagcagattgaacaaatactgcagcagcat
agtgccaaaattgttcagaatccaatgaatacaactttctgcgtgatagtaggcaatgat
aaaacgatgcgaggaaaggaagtaataaacagtggacgatacgatgttgtaactttggat
tggtttaaacgtctcgtcagtcgatccgattgggccacgtttgacgactttttaccatgg
gaattattatgcagccgggatatcactaatcacaaagttgcagaaaactatgatgaatat
tacgataatttcactgttgacgcagacgaggaaagtttgaagcgttcattcggcaggatc
gcgagatcgaatatcttcgagctctctgcggacaagcagtttactattgagcaggaaagg
gaaatggacgagcaattgttcgggagtacatcgccttattcgctatttagagatataatt
ggattctttgagaatcaatcgtgttgcgccaaatataaattccgtttcatgtctggtacg
gttaaagacaacattgatgattccgttacgcatgcctttgtggaagacacaagcgggacg
agcattgtcgtgaaagcacgtgagcggaaacatattcaaatcgtaaaatgtaaatggatc
gagaaatgttttcaaaatggccgattgtgtgaaattacagattacctagttgattattga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (10)   
   Pfam (10)   
All databases (31)   

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