KEGG   Aliivibrio fischeri ES114: VF_0952
Entry
VF_0952           CDS       T00236                                 
Symbol
ruvB
Name
(GenBank) ATP-dependent DNA helicase, component of RuvABC resolvasome
  KO
K03551  holliday junction DNA helicase RuvB [EC:5.6.2.4]
Organism
vfi  Aliivibrio fischeri ES114
Pathway
vfi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vfi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    VF_0952 (ruvB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vfi03400]
    VF_0952 (ruvB)
Enzymes [BR:vfi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     VF_0952 (ruvB)
DNA repair and recombination proteins [BR:vfi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     VF_0952 (ruvB)
    RecFOR pathway proteins
     VF_0952 (ruvB)
SSDB
Motif
Pfam: RuvB_N AAA_lid_4 RuvB_C AAA AAA_5 Mg_chelatase nSTAND3 AAA_3 AAA_14 Rad17 AAA_22 AAA_16 AAA_18 DUF815 NTPase_1 TIP49 AAA_17 Bac_DnaA RNA_helicase AAA_2 Sigma54_activ_2 NB-ARC AAA_28 AAA_24 TniB bpMoxR AAA_PrkA TsaE ATP-synt_ab ABC_tran
Other DBs
NCBI-ProteinID: AAW85447
UniProt: Q5E699
Position
I:1047581..1048594
AA seq 337 aa
MIEADRLIAADNPTFREEDVIDRAIRPKKLDDYQGQDHVRSQMEIFIKAAQMREEALDHL
LIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDILFIDEIHRL
SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV
QRLEYYKVEDLQHIVQRSADCLNLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVMS
DGNISSEIADKALNMLDVDVRGFDYMDRKLLLAIMEKFDGGPVGLDNIAAAIGEERDTIE
DVIEPYLIQQGYLQRTPRGRIVSDRAYLHFGIDKPDK
NT seq 1014 nt   +upstreamnt  +downstreamnt
atgattgaagctgatcgtttaattgcagcagataacccaacttttcgtgaagaggatgtg
attgatagagccatccgtcctaaaaagctagatgattaccaaggccaagaccatgttcgt
agccaaatggagattttcattaaagctgcacaaatgcgtgaagaagcactggatcactta
ctcatttttggccctccaggtttaggtaagacaacattagccaatattgtagctaatgag
atgggcgtaaatataagaacgacatcaggaccggttcttgaaaaagcaggggacttagct
gcattactaactaatttagaagaaaacgacattttatttattgatgaaattcatcgttta
agtcctatggttgaagaagtgctttatcctgcgatggaagactatcaacttgatatcatg
ataggtgaaggtcctgcagcacgttcaataaagatagatttacctccgtttactttaatt
ggtgcaacgacaagggctggatcattaacatctccgcttcgtgatcgttttggtattgtc
caacgtttagaatattacaaggtagaagatcttcagcatattgttcaacgcagtgcagat
tgtttgaatttatccatggaatctgaaggtgcattagaagttgctcgtcgtgcacgcggt
actccacgtattgccaaccgtttattacgtcgtgttcgtgactatgctgaagtcatgagt
gacgggaacatttcatctgagattgctgataaagcgcttaatatgctcgatgtggacgtt
cgtggttttgattacatggacagaaagttattgttagcgattatggaaaagtttgatggt
gggcctgttggtttagataatattgcagcagccattggtgaagagcgtgataccattgaa
gatgttattgaaccttatctcattcagcaaggttatctgcaaagaacgcctagaggacga
attgtatccgatagagcgtatctacattttggaattgataagcctgataaatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (30)   
   Pfam (30)   
All databases (47)   

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