KEGG   Aliivibrio fischeri ES114: VF_B0044
Entry
VF_B0044          CDS       T00236                                 
Name
(GenBank) protein VirD4
  KO
K03205  type IV secretion system protein VirD4 [EC:7.4.2.8]
Organism
vfi  Aliivibrio fischeri ES114
Pathway
vfi03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vfi00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    VF_B0044
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vfi02044]
    VF_B0044
Enzymes [BR:vfi01000]
 7. Translocases
  7.4  Catalysing the translocation of amino acids and peptides
   7.4.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.4.2.8  protein-secreting ATPase
     VF_B0044
Secretion system [BR:vfi02044]
 Type IV secretion system
  Conjugal DNA-protein transfer (VirB/D) protein
   VF_B0044
SSDB
Motif
Pfam: T4SS-DNA_transf TraG-D_C TrwB_AAD_bind
Other DBs
NCBI-ProteinID: AAW88286
UniProt: Q5DY60
Position
pES100:32705..34531
AA seq 608 aa
MIHSANTEIVTPYTIIEQWIYYSEDMRYQKSLVTALLIGFGIAVIAPTLLFLFNTKEKEE
LHGSARFATQDEIKKEGLTNNNGKGILIGQFNGFLGFFKTYLYFNSDSFILLIAPTRSGK
GVGVVIPNLLVYNQSMVILDLKQENFSITSKYRAKYGQQVFLFNPFTENGQTHRYNPLSY
VREGDCKIGDILTITASFYPIDDLKNSFWNNQASNLFLGLALMISETPSLPFTIGELLRQ
SSGKGKPLKEYLQGIMDDREKSSSPLSESCIDALNRFIALTDNSLSNVLASFNAPLTLWA
NPLFDAATSANDFDLRELRKKKMTVYIGITPDYLEQAERILNLFFSQLININTKELPEHN
PELKYQCLLVMDEFTAMGRIGILAKSVSYMAGYGLRLLTIIQAPSQLDSVYGKEEARTYK
TNHAGQILFAPRENEDAEEYSKAIGYKTVKAKSNSKTRGELKQTDSTSDQRRAVMLPQEI
KEIGMWKEIICIENLKPIFCKKVQYFNDPVFIDRLKEVSSSLKSIEGIPTRDQLKNAITN
KELQIEIPTLERIDSKPTPTLFDSPLNQPLPLSDHDIATVQEEVETEEQYDESLLATTYD
DSDLPDFL
NT seq 1827 nt   +upstreamnt  +downstreamnt
atgatccatagtgcaaatacagaaatcgtcacgccctataccatcatagagcaatggata
tattactctgaggacatgcgctatcaaaaatcgcttgtcaccgcattactgattggtttt
ggtattgccgttatcgctcctaccctccttttcctttttaataccaaagaaaaagaagaa
cttcacggctcggctcgttttgcaacgcaagacgagatcaaaaaagaaggcttaacaaac
aataacggtaaagggatcttaatcggtcaatttaatgggttccttggtttttttaaaacc
tatctttattttaatagtgacagtttcatactattaatcgctcccacacgaagcggtaaa
ggggttggcgtcgttattcctaatttactggtttataaccaatcaatggttatattggac
ttaaaacaagaaaacttttctatcacctcaaaatatcgcgctaagtatggccaacaagtc
tttttgtttaatccatttacagaaaatggacaaacacacagatacaacccgttgagttac
gttcgtgaaggtgattgcaaaattggtgatattctcactatcactgcttctttttatcca
atcgatgatctaaaaaatagcttttggaataatcaagccagtaacttatttttagggtta
gccttaatgatctctgaaaccccgtcattaccattcaccatcggtgaactactaaggcaa
tcgtctggaaaaggaaaaccattaaaagaatatttacaaggcataatggatgacagggag
aaatcttcatcccctctttctgaatcttgtatcgatgcactaaaccgcttcatcgcgtta
accgacaacagtttatctaacgtactggcctcatttaatgccccattaacactgtgggcg
aatccattatttgatgctgcgaccagtgccaatgattttgatttacgcgagctaagaaag
aaaaagatgacggtttatattggtattacacctgattacttagaacaagctgagcgcata
ttaaatctgttctttagccaattaattaatatcaataccaaagagctgccagagcacaac
cctgagctgaaatatcaatgcttattggttatggatgaatttaccgcaatgggaaggata
ggcattcttgcaaaatccgtatcttacatggctggttatggccttcgtttattaaccatt
attcaagcaccgtctcaactagacagtgtatatggcaaagaagaagccagaacctataaa
acaaaccatgcaggacaaatcctatttgcaccccgtgaaaatgaagatgctgaggagtat
tcaaaagccatcggttacaaaaccgtaaaggcaaaaagtaactctaagaccaggggagaa
ctgaaacaaacggattcgacatcagatcaacgtagagccgttatgttaccccaagaaatc
aaagagatagggatgtggaaagaaatcatttgtattgaaaatcttaagccaattttttgt
aaaaaagttcagtattttaatgatcccgtctttatcgataggttaaaagaagtctcttca
tccctcaaatcgatagaaggaatacccacacgagatcagttaaaaaacgcgatcacaaat
aaagagcttcaaattgaaataccaacactagagcggattgactctaagccaactccgaca
ttatttgactcaccattaaatcaaccactgccgttatcagatcatgatattgccactgtt
caagaagaagtcgaaacagaagaacaatatgatgaatctcttttagcgacaacatacgat
gattctgacctccctgattttctctaa

  All links  
Gene (10)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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