KEGG   Vibrio fluvialis: AL536_01760
Entry
AL536_01760       CDS       T04379                                 
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
vfl  Vibrio fluvialis
Brite
KEGG Orthology (KO) [BR:vfl00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:vfl03016]
    AL536_01760
Enzymes [BR:vfl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     AL536_01760
Transfer RNA biogenesis [BR:vfl03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    AL536_01760
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS RtcR
Other DBs
NCBI-ProteinID: AMF92234
UniProt: A0A109X0H8
Position
1:363323..363862
AA seq 179 aa
MSSDKRCFFALTFADEAKARLSQERDTLKAHADNGPFTHSENFHLTLEFIGDVASEQLPT
LKGLLHELECAPMVLRIDRLGHFNIKGRQLVWLGVAEHPPLMALQAELRMKLADTPFSPE
NRSYIPHITLGRHVVLNTRLKALHLEPFTLPVHSIALMESKRVDNKLIYEALEEVLLSP
NT seq 540 nt   +upstreamnt  +downstreamnt
atgagttcagataaacgttgtttcttcgcactgacttttgctgatgaagccaaggcgcgg
cttagccaagagcgggacacgctaaaagcacacgcggacaacggcccgtttactcacagc
gaaaattttcatctcacgctggaatttatcggtgacgttgcaagtgagcagttacccacg
ctcaaaggcttattgcatgagcttgaatgtgcgccaatggtgctgcgtattgatcgtctt
ggccatttcaatatcaaaggccgtcagcttgtctggctgggagtggctgaacacccgcca
ctgatggcgttgcaagcggagttgagaatgaagctggctgatacgcctttcagcccggaa
aatcgatcttacattccgcacattacactgggcagacatgtggtacttaatacccgcttg
aaagcgctgcatcttgaaccctttacgttacctgtacactctattgcgttgatggaaagc
aagcgggtggacaacaaactgatttacgaagcgctggaggaagttctcctctcaccatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system