KEGG   Viruses: 1489965
Entry
1489965           CDS       T40000                                 
Symbol
pol, SFoVgp3
Name
(RefSeq) Western chimpanzee simian foamy virus; pol polyprotein
Virus
2170203  Western chimpanzee simian foamy virus
SSDB
Motif
Pfam: Spuma_A9PTase SH3_11 RVT_1 RNase_H rve Integrase_H2C2 RT_RNaseH_2 RT_RNaseH rve_3 DNA_pol_viral_C
Other DBs
NCBI-GeneID: 1489965
NCBI-ProteinID: NP_056803
RS: NC_001364
UniProt: Q87040
Position
NC_001364:<3775..7215
AA seq 1146 aa
MNPLQLLQPLPAEVKGTKLLAHWDSGATITCIPESFLEDEQPIKQTLIKTIHGEKQQNVY
YLTFKVKGRKVEAEVIASPYEYILLSPTDVPWLTQQPLQLTILVPLQEYQDRILNKTALP
EEQKQQLKALFTKYDNLWQHWENQVGHRKIRPHNIATGDYPPRPQKQYPINPKAKPSIQI
VIDDLLKQGVLTPQNSTMNTPVYPVPKPDGRWRMVLDYREVNKTIPLTAAQNQHSAGILA
TIVRQKYKTTLDLANGFWAHPITPDSYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADAV
DLLKEVPNVQVYVDDIYLSHDNPHEHIQQLEKVFQILLQAGYVVSLKKSEIGQRTVEFLG
FNITKEGRGLTDTFKTKLLNVTPPKDLKQLQSILGLLNFARNFIPNFAELVQTLYNLIAS
SKGKYIEWTEDNTKQLNKVIEALNTASNLEERLPDQRLVIKVNTSPSAGYVRYYNESGKK
PIMYLNYVFSKAELKFSMLEKLLTTMHKALIKAMDLAMGQEILVYSPIVSMTKIQKTPLP
ERKALPIRWITWMTYLEDPRIQFHYDKTLPELKHIPDVYTSSIPPLKHPSQYEGVFCTDG
SAIKSPDPTKSNNAGMGIVHAIYNPEYKILNQWSIPLGHHTAQMAEIAAVEFACKKALKV
PGPVLVITDSFYVAESANKELPYWKSNGFVNNKKEPLKHISKWKSIAECLSIKPDITIQH
EKGHQPINTSIHTEGNALADKLATQGSYVVNCNTKKPNLDAELDQLLQGNNVKGYPKQYT
YYLEDGKVKVSRPEGVKIIPPQSDRQKIVLQAHNLAHTGREATLLKIANLYWWPNMRKDV
VKQLGRCKQCLITNASNKTSGPILRPDRPQKPFDKFFIDYIGPLPPSQGYLYVLVIVDGM
TGFTWLYPTKAPSTSATVKSLNVLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFS
TPYHPQSSGKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQLL
FGIDSNTPFANQDTLDLTREEELSLLQEIRASLYQPSTPPASSRSWSPVVGQLVQERVAR
PASLRPRWHKPSTVLEVLNPRTVVILDHLGNNRTVSIDNLKPTSHQNGTTNDTATMDHLE
QNEQSS
NT seq 3441 nt   +upstreamnt  +downstreamnt
atgaatcctcttcaactactacagccgctcccagcggaggtcaagggaactaagttacta
gcccactgggattcaggggcaacaataacttgtatccccgaaagctttctagaagatgaa
cagccaattaaacagactttaattaaaacaattcatggagaaaagcagcaaaatgtttat
tatttgacttttaaagttaagggaagaaaagtggaagcagaagtaatagcttccccttat
gaatacattttgctgtcaccaacagatgttccttggttgacgcaacaacctttacaatta
accattctagttcctcttcaagagtatcaagacagaatattgaataaaactgcccttcca
gaagaacaaaaacagcaattaaaagctttgtttactaaatatgataatctatggcaacac
tgggagaatcaagttgggcatagaaaaattaggccacataacatagctactggtgattat
cctcctcgccctcagaaacaatatcctattaatcctaaagcaaagcctagcatacaaatt
gtaatagatgatttgctaaaacaaggagtgttaacaccccaaaatagcacaatgaataca
cctgtttatcctgttcctaaaccagatggaaggtggagaatggttttagattatagagaa
gtaaataaaactatacctttaacagcggcccaaaaccaacattctgctggtatattggcc
actattgtaagacaaaaatataaaactactttagatctggctaatggattctgggctcat
cccattacacctgattcctattggcttactgcattcacttggcagggtaaacagtactgt
tggacacgccttccacaggggtttctaaatagtccagctttgtttacagctgatgcagta
gatttattaaaagaggtacctaatgtacaagtgtatgtggatgatatatatttaagtcat
gacaacccacatgaacatattcaacagttagaaaaagtatttcaaattttgctacaagct
ggatatgttgtgtctctaaagaagtctgaaataggccaaagaactgtagagtttttagga
tttaatattactaaagaaggtcgtggcctaacggatacttttaaaacaaaattattaaat
gttacaccacccaaagatttaaaacaattacagagcatactgggattgttaaattttgct
agaaattttatacctaattttgcagaattggtacaaacgttgtataatttaatagcttca
tctaagggaaaatatattgaatggactgaagacaatactaaacagttaaataaagtaatt
gaagctttaaatactgcttctaatttagaagaaaggttaccagaccaacgcctggtaatt
aaagtaaatacttctccatctgcaggatatgtaaggtattataatgaatctggcaaaaaa
ccaattatgtatctaaattatgtattttctaaagcagaattaaaattttcaatgttagaa
aaattgttaactacaatgcataaagctttaattaaagctatggatttagcaatggggcaa
gaaatactagtttatagtccaattgtatccatgaccaagatacaaaaaactccattacca
gaaagaaaagctttaccaataagatggattacttggatgacctatttagaagatccaaga
atacagttccattatgacaaaactctacctgaattaaaacatattccagatgtgtataca
tctagtattcctcctttaaagcatccttctcaatatgaaggagtattctgtacagatggt
tcagctatcaaaagtcctgatcctactaaaagcaataatgctggcatgggaatagttcat
gctatatataatccagagtacaaaattcttaatcaatggtctatacctttgggccatcat
actgctcaaatggctgaaatagcagcagtagagtttgcatgcaaaaaggctttaaaagta
ccgggcccagtactagtaattacagatagtttttatgtagcagaaagtgctaataaagaa
ttaccctattggaaatctaatgggtttgttaataataaaaaagaacctcttaaacatatt
tctaaatggaaatctattgctgaatgtttatccataaaaccagacattacaattcaacat
gaaaaagggcatcaacctattaatactagtattcatactgaaggtaatgccttagcagat
aagcttgccacccaaggaagttatgtggtaaattgtaataccaaaaaaccaaacctggat
gcagagttggatcaattgttacagggtaacaatgtaaaaggatatcctaaacaatataca
tattatttagaagatggcaaagtaaaagtttccagacctgaaggggttaaaataataccc
ccacagtcggatcgacaaaaaattgtacttcaagcccacaatttggctcataccggacgt
gaagccactcttttaaaaattgccaatctttactggtggccaaatatgaggaaggatgtg
gttaagcaactgggacgttgcaagcagtgtttgatcacgaatgcttccaacaaaacttct
ggccctatattaaggccagataggcctcaaaagccttttgataaatttttcattgattat
attggacctttgccgccttcacaaggatatctatatgttttagtaattgttgatggaatg
acaggttttacatggttatacccaactaaggctccttctacaagcgcaactgttaaatct
ctcaatgtactcactagtattgcaattccaaaggtgattcactctgatcaaggtgcagca
ttcacttcttcaacctttgcggaatgggcaaaggaaagaggtatacatttggaattcagt
actccttaccacccccaaagtagtggaaaggtggaaaggaaaaatagtgacataaaacga
cttttaactaaactgcttgtgggaaggcctacaaagtggtatgacttgttgcctgttgta
caacttgctttaaataatacttatagccctgtattaaaatatactccacatcaactctta
tttggtatagattcaaatactccatttgcaaaccaagatacacttgatttgacgagagaa
gaagaactttctcttttacaggaaattcgtgcctctttataccaaccatccacccctcct
gcctcctcacgttcctggtctcctgttgtaggccaattggtccaggagagggtggctagg
cctgcatccttgcgaccacgttggcataaaccttccactgttcttgaagtattgaatcct
aggactgttgttattttggaccatcttggcaacaacagaactgtaagtattgacaattta
aaacctacttctcatcagaatggcaccaccaatgacactgcaacaatggatcatctggaa
caaaatgaacaaagctcatga

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
Protein domain (10)   
   Pfam (10)   
Taxonomy (1)   
   TAX (1)   
All databases (44)   

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