KEGG   Viruses: 1502336
Entry
1502336           CDS       T40000                                 
Symbol
RCMVs1gp1
Name
(RefSeq) Red clover mottle virus; polyprotein
Virus
12262  Red clover mottle virus
SSDB
Motif
Pfam: RdRP_1 RNA_helicase Peptidase_C3 Peptidase_C3G RNA_pol_inhib
Other DBs
NCBI-GeneID: 1502336
NCBI-ProteinID: NP_620468
RS: NC_003741
UniProt: P35930
Position
NC_003741:270..5864
AA seq 1864 aa
MYMLTFEPGLCVAGIIRQVRSNPFMHVVQAYARTTETYREDIEMTKSMLKLKADEPLLVM
SIVAAAMDFQTMVMAPIEMEASEFLYGFYAERMSYIVTNRGMSELHEYIQLQCQRHLLVK
VEIDGQYLVQEHEYEAQGFNIKRVKELITDVATWVPKKVKGMIGWSVDAVLDSFQEYFYK
VITERIPMAMKVCSWVATVWDQIKTWIEDAMTAMSSFLQGCNELLTWGLATLAACCALNV
LERILIFMEFLDESIDIAGIFLRTGVVAAACYHFSSTAKGFTEMMSVLSVATTAVAAVVC
ANYFGGSKTKKVNAQGNPVDLLERIAAGLSSISQDSLVSLGKSCSAINSIATSYGHLRNF
AGRVLTMLRDFAWKILGLETRFLADAALVFGEDVDGWLQRISALREAYVSKAYSSQDEVF
EMNVLLERGYKMRHLMATGSRVSPAIGNMLMQGLADLERLHRNAAVQGVKGVRKIPFTVF
AHGNSRCGKSLLIGKLISDFQEHKGLGEDTVYSRNTTETHWSGYRRQPIVVIDDFAAVES
DISAEAQLINLVSSTPYSVVMAAIEEKGMTFDSQFIFASTNFLEVSPNGKIRCDDAFRNR
RHVLIDVKLKPEVEYQSDDFTANQSYNILEHSHGRYNVVATFDNYEELLAYCLTKHEQHE
AEQEANLAKLRRTNKFESHFKKFEQVLQLSTYFSSSIERIKREALATTDGADDYHLLYVV
PRNGSYLHVAANKDFQIQQWYGPVEEVAEEDILRASERMLLGAYEFLLLSTELNVVVKNH
LPELICTDNYDHNLEFCGVVGDPVYHQQLLKNIRALKPWHRAVLFGIGTLMGAKNPTPWY
KRMWEGIKDVLYKAYSTEISQWPVPLKITCGIVLVGIVGAGFWKTVSVLTNAGNGAGLVG
AAVNSFSVVSTAEAQSRKPNRFEVQQYRYKNVPLTRRSWGNAQMSLDQSTVSILNKCHAK
FIIASQHAQIVLVPGRRFIGYSHFFCNLKHPLMVQIETADRTYFHRYQPENMEYIEDSEL
CVYHSSCLEDISHSCWDLFCWDPDKELPKKFSADFVSCKYNTWTKSVEPTWANVDAEVIK
EDFTICDGEYRNTVSTSIRYEAPTVMSDCGSMIITNVGGKTKIVGIHVAGRDNKIGMASL
LPPLLPCAQAQGAEKYFNFYPIEYDAAEGIARVGELKPKLYIPLPKKTSLVKTPEEWHLG
TPCDKVPSILVKGDPRLADTVHADYDPCLSGLTKYSTPMSPLDSVLLGETCQEILDEWFD
CLPEGFELGEVTINEALNGVDGVDYMDRIPLATSEGFPHVMSREQGEKGKQRFVQGDGHI
VSLIPGTSVHEAYETLSRTIATEVPTLVGIECPKDEKLPFRKVFTKPKTRNFTILPMEYN
ILVRQYFLNFVRFIMKKRDVLPCQVGINPYSMEWSIVASRLKSQGNDILCCDYSSFDGLL
SKQIMEMMADMINRFCGGGTLICAKRKNLLMACCSRLAISRDSVWRIECGIPSGFPLTVI
CNSIFNEILVRYHYKLLLQEHNAPNMYVQSFKNLISMVTYGDDNLISVNAVVKPYFDGTK
LKQAMARNGIIITDGKDKTSATLEFRRLEDCDFLKRGFLKRSSVLWDAPEEKASLWAQLH
YVNVNNCEMQVAYMTNLVNVLRELYMHDPTEMVEFRRLALKSIPWLNTTDLPTLYQVKEF
YAEQRLRNIPDHNDSLDMLTSVDLLGPAILGEGVPQEALVLSELLEVRDLRYHTVPDNDN
GKEVWILFNTMYPQKLLPSNCHSFTWNCGQGRGGLPTQHWLATNVTRTDSKLNKLIRTAV
AANKKIVLATKDNILPINVIAVLLAARNKVMPSLATNALLTYVIGAAKKLNFLTSECQFA
FFNV
NT seq 5595 nt   +upstreamnt  +downstreamnt
atgtatatgttaacttttgagccgggtctttgtgtggcaggtatcatacgccaagtgcgt
agtaatccgttcatgcatgttgtgcaagcctatgcacgcacaacagaaacttaccgtgaa
gatattgaaatgacaaaatccatgttgaagcttaaagctgatgagcctttactggttatg
tcaattgttgcagcagctatggattttcagacaatggttatggcaccaatagaaatggaa
gcttctgaatttctttatggcttctatgcagaaagaatgtcatacattgtgacaaataga
ggtatgtcagagctccatgagtatattcagttgcaatgccaaagacatctacttgtcaag
gtggagattgatggacagtacttagtccaggagcatgagtatgaggcacaaggatttaac
atcaagagggttaaagaattaatcacagatgttgcaacttgggtcccaaagaaagtcaag
ggaatgataggttggtctgtagacgcagttctagactcttttcaggaatacttttataaa
gttattactgaaagaattccaatggccatgaaggtgtgttcatgggtggccacagtttgg
gaccaaatcaagacatggatagaagatgctatgactgccatgtctagttttctccagggt
tgtaacgaattactaacatggggtttagctactctggcagcatgctgtgctctaaatgtt
ttggagcgaattctaatattcatggaatttttagatgagagtattgacatagcaggcatt
ttccttcggactggagtggttgcagcagcttgttaccattttagttccacggcaaaagga
ttcacagagatgatgtctgtcctttcagtcgcaacaacagccgtagctgctgtagtctgt
gcaaattactttggaggtagtaaaaccaaaaaggtaaatgcgcaaggtaatccagtagat
ttattggaaagaatagcagctggtctgtctagtatatcccaagattcattggtatccctg
ggtaagtcctgtagtgctataaactctatagctacaagctatggacatctgcgtaacttc
gcaggtagagttttaactatgcttagggattttgcctggaaaattttggggcttgaaact
cgtttccttgcagatgctgctttagtgttcggagaagacgttgatggttggttgcagaga
attagtgctttgagagaggcctatgtttccaaagcatattcctcacaggatgaggtattt
gagatgaatgtcctgttggaaagaggctataaaatgagacatctaatggcaacaggctct
agagtttcccctgcaattggtaacatgctcatgcagggtttggcagatcttgagagattg
cacaggaatgctgcagtacagggcgtgaaaggtgttaggaaaataccttttacagtcttt
gctcatggtaactccagatgtggaaagtctctacttattggcaaactcataagcgatttc
caagaacataagggccttggtgaggacacggtgtactctcggaacaccactgaaacgcac
tggagcggttatagaagacaacctatagtggtgattgatgactttgcagcagttgaatct
gatatttctgctgaggcgcaactgataaatcttgtttctagcacaccctattcagttgtt
atggctgccatagaggagaagggaatgacttttgactctcagttcatatttgcatctacc
aattttctggaagttagccctaatggaaagataagatgtgatgatgctttcagaaatagg
agacatgtgctaattgatgtgaagcttaaacctgaagtagagtaccagagtgatgatttc
acagcaaatcagagctacaacattttagagcacagtcatggaagatacaatgttgtggca
acttttgataactatgaggagctgttggcatactgtttgaccaaacatgaacaacatgaa
gccgagcaggaagccaatcttgcaaagctgcgtaggactaataaatttgagtcccatttc
aaaaaatttgaacaagtgctacaattgtccacatatttcagctcttccatagagagaatc
aagagggaagctctggcgaccacagatggggcggatgattatcatttactgtatgtggta
cccagaaatggttcctatttgcacgttgcagctaataaggattttcagatccaacagtgg
tacggacctgtggaagaagtcgcagaggaggatattttgagggcatcagaaaggatgctg
cttggagcctatgagtttttactactttccacagaactcaatgtggtggtcaaaaatcat
ctaccagagttgatatgtactgataattatgatcacaacctggaattttgtggtgttgtt
ggagaccctgtatatcaccaacaactactcaagaacattagagccctcaaaccatggcat
agagccgtgctctttggtattggcactcttatgggagccaaaaatccaacaccatggtat
aaaaggatgtgggaaggaatcaaggatgttctgtacaaagcctactctactgaaatatcc
caatggcctgtacccttgaaaatcacatgtggaattgtgttggttggcattgtcggggca
ggattttggaaaacagtttcagttctgacaaatgcgggcaatggggcaggactggtagga
gcagcagtgaattctttctcagttgtttctacagctgaagcacagagcaggaagccaaac
agatttgaagtgcaacagtataggtacaagaacgtgcctcttactagaaggtcatggggt
aatgcccagatgtcactcgaccaaagcactgtgtcaatattaaacaaatgtcatgccaag
tttatcatagcttcacaacatgctcagatagtgctagtgccaggcagaaggtttattggt
tactctcactttttctgcaatcttaaacatcctttgatggtacagatagagactgctgat
agaacttactttcacaggtaccaacccgaaaacatggagtatattgaagattctgagctc
tgtgtttatcatagttcgtgcctagaggacatctctcatagctgctgggatcttttctgc
tgggatcctgacaaggaactgccaaagaaattttcagcagactttgtttcctgcaagtac
aatacctggaccaaaagtgttgaaccaacatgggcaaacgtggatgctgaggtgattaaa
gaagattttaccatttgtgatggtgaatatcgcaacacagtgagtacgagcatcaggtac
gaagcgccaacggttatgtcagattgtggttccatgatcatcaccaatgtgggtggaaaa
accaaaatagtaggcattcatgttgcgggaagggacaataagataggcatggccagtttg
ctgcctccactattgccctgtgcacaggctcaaggtgcagaaaagtattttaatttttat
ccaatagagtatgatgcagctgaaggtatagctagggtaggagagttaaaacccaaactt
tacattcccttgccaaagaaaacctcattggttaaaacacctgaagaatggcacctagga
acaccctgtgataaagtgccttcaattctggtgaaaggggatcccaggctagcggacact
gtgcatgcagattatgacccatgtctctcgggtctcactaagtattccacaccaatgtct
ccgttagattcagtgctgcttggggaaacttgccaagaaatactggatgagtggtttgat
tgtttgccagaaggatttgagcttggggaggtgactattaatgaggcacttaatggagtt
gacggtgtggattacatggatcgcatacctttggctacttcagaaggcttccctcatgtc
atgtcacgagaacaaggtgagaaagggaaacaaagatttgtgcaaggagatggacatatt
gtctctttaattccaggtactagtgttcatgaagcatatgaaacattgtctcggacaata
gcaacagaagtgcctacccttgttggaatagagtgtcctaaagatgagaagttgcctttc
agaaaggtgttcacaaagccaaaaactaggaatttcactattcttcccatggaatacaac
atcttggttaggcaatattttcttaattttgtgcgtttcatcatgaagaagagagatgtt
ttgccttgccaggtaggtatcaatccttatagcatggaatggtccatagttgcatcgaga
ttgaagagtcaaggcaacgatattctgtgttgcgactactcttcatttgatggtttgctc
tctaaacagattatggaaatgatggctgatatgatcaatagattctgtgggggcggcact
ctcatctgtgcaaagagaaagaacttactgatggcttgttgttctcgcctagccatctcc
agggacagtgtatggaggattgagtgtggaataccatcaggtttccctttgacagtcatc
tgcaatagcatcttcaatgaaattctggtcaggtatcactacaaactactgctgcaagag
cataatgctcccaacatgtatgttcaaagctttaaaaacctgattagcatggtgacctat
ggtgatgataatctgatttctgtgaatgctgtggtgaagccttactttgatggaacaaag
ctcaagcaagcaatggctaggaatggcataatcataacagatggtaaggacaaaacaagt
gccacacttgaatttcgacgcttggaagattgtgattttctcaaaagaggttttcttaag
agatcttcagtactctgggacgcacctgaggagaaagccagtttatgggcacaattgcat
tatgtaaatgtcaacaattgtgaaatgcaagtggcctatatgacaaatttagtgaatgtg
ctgagggaattgtacatgcatgatcctactgaaatggtggagtttcgtagattggcattg
aagtccattccttggttgaacaccacagatctaccaacactataccaggttaaagagttt
tatgcagagcaaagattgaggaatatccctgaccacaatgacagtcttgacatgctgact
agtgttgatctactaggaccagcaatcctgggggagggggttccacaagaagccctagtg
ctaagtgaactgctagaggttagagatctgagatatcacactgttccagataatgataat
ggcaaggaagtgtggattctattcaacaccatgtatcctcagaagctcttgccatcaaat
tgccacagtttcacttggaattgcggacagggtagaggaggtttaccaacacaacactgg
ttggctacgaatgtgacaagaacagattccaagctcaacaagttaatcagaacagctgtt
gcagccaataagaagattgtgttagcaaccaaggacaacatattgcctatcaatgtcatt
gcagttctgctagcagccagaaacaaggtgatgccttctttggctacaaatgcattgtta
acttacgtcataggtgcagccaagaaacttaattttttgacctctgagtgtcaattcgct
ttctttaatgtctga

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (43)   
   RefGene (41)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
Taxonomy (1)   
   TAX (1)   
All databases (53)   

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