KEGG   Viruses: 5075997
Entry
5075997           CDS       T40000                                 
Symbol
SSDRV_gp1
Name
(RefSeq) Sclerotinia sclerotiorum debilitation-associated RNA virus; polyprotein
Virus
213034  Sclerotinia sclerotiorum debilitation-associated RNA virus
SSDB
Motif
Pfam: Vmethyltransf Viral_helicase1 RdRP_2 AAA_14 Roc
Other DBs
NCBI-GeneID: 5075997
NCBI-ProteinID: YP_325662
RS: NC_007415
UniProt: Q6YI57
Position
NC_007415:93..5195
AA seq 1700 aa
MKLRNPKAPIRNDRKAQRSFHKMLSLKAQAKLALTIQDRLELGLLSNNFIRKKLQFVDGY
CYLKFLRCAERKTAARNLGSDPSLGLMKRKLVPSQYHSWQSNYTLLVTKSSKLTFAHVNR
ALGGQKLAEVPANCCIGSTICPFLSVPGDHSSYLVNQLPYMNGYCYLKLIRRTCRFNAVV
TLGPWPLATDFFDYIIHRNLNKDLGLFKCNLENTINGSFCHIVEADPGSQNCIFPLPQDC
RIGGSISEVVKTLGPDKEMIERDAVTEIKKEIAIVRKYNPYHHSSKQQSALESYGIGSDP
YAVRSHTHAAEKAIENKLLDIVGMNLRRRSVITMLWQKRNKAHLMGRSNCKDVYVNTIME
AKDLVRYDQFSFGLPSVATSTAFIGDALHHMTPESVFDLFERSPNLMVLHATIVIPPETL
LKCRSSNPELYSLRYYDDKFVYIPEGHAGGSYVHEVKNSNWLAISHIQRGGKFLTVKRLE
TLAAHHYFVIVKGKVETDSIRVFQSPSQVELLDIFADRQSNVRCSLDHAFAIKMERYVHS
LKRLELADVTAKTRQLLSSEELLQYSPTDLVKIDNYFYFLAHTSRFNSSEELIGSGFFES
LVSPLKQWFSEICEKFLGKSNFHKTLEALEWKVINYDVKTVIYDMSKPWEKLHWKSENNL
LSFDLDSNDNPTSLVDNTDCEASYSESTKFDYELVQVEDDFIDIRIPGIDIPIYDSEYLA
SEEPVEVEESPIPEVLPEIEDNLSDSMSIDGWMSQSLKTFLPEHDDKVLSILEKFGVSKY
GQVVGKNLILPITDFKSVQFEKIGQDEFTESLQDRGFGFVSYTPDAERVAVAATDLEHGQ
GVLITSDEAGELFKKAMPMSVYTCVILGAGGAGKTTFVEKFVKDNPKSFTVVTPLSVLKK
EWQRKGAKNVFTYETALKRSLKKPANEYVILDDFTRFPAGWIELYMSLNTKSKYIVIGDS
RQADSHSMSGAFANALVPAIDLFAPLSPFYLNWTWRMTRPVANALGHVSWKLPESGKPIL
SVSSEVPKDCVVLAPSTTLKVGVETVNDKAFTYTSAQGATFDKVAILIDDNITRVCGDKA
VYTALSRSKGEIVFVSTVTGPDTFEKVKCTPFLRTFVELVREYELNQPKVREPEEDFVDD
VTPVTSQPKVSEEFLIEELNKNSVEKFDREIFRADLGHTDAVKEIGRVTEQIPRQQRSDE
ALNLVTLDKRVHHATVEENLDELARKKALGNILWTNFKEQYYSGLESVMVDQDLLVSCRA
EITKTYLSKTEALLKGGQLRQSPDFDKFKIADFLKTQWVRKTEKYGLPIKAGQTVTSFMQ
ETVMATGTLSRYMRRMFDKLCTNPNVYLHREKTEQDFSTWVKNGWNFSGHATINDCEAFD
ASQDGAFVEFERLHAEFLGVPRELIDFYVDTKIKSYIWRGTISVMRLSGEGPTYDFNTWA
NMAFMATKYSIPSVAMTAYSGDDFACDQVLSVKPAFKELECRFKLKEKRFLKSQGRGSYA
DFCGMIITPNGVIKNPRKLYLSLKSHDEIGTIDKAIVNYYNDLRTLISLGDNIFSALDAT
ETEFFAGCLNVVHDYILRGSNYEGHQNLTLFKKPRTIKWRVERDETRDCLIHMIIQDRKF
IRNLLEGVEQTCDNKPNSNLIFRGMTNGYQKRAKFNQLLNRQDEYLDKVLHKSAGQNALR
RLTATLDDTQDSTVAEQSAV
NT seq 5103 nt   +upstreamnt  +downstreamnt
atgaaactgcgcaatcctaaagcgcccataaggaatgatcgtaaggctcaacgatcattc
cacaagatgttgagcctcaaagcgcaagccaagcttgctctgacgattcaagatcgcctc
gagcttggtcttctttctaataattttattagaaagaagcttcaatttgtagatggctac
tgctatctaaaatttctcagatgcgctgagaggaagactgccgcgcggaatcttggttcc
gacccatctctcgggttaatgaagagaaaattggtacctagtcagtaccactcgtggcaa
agcaattatacgttgcttgtcactaagtcctccaaattgacgttcgctcacgtcaatcga
gcccttggaggccaaaaattagctgaggtaccagctaattgttgtatcggtagtaccatc
tgtccctttctctcggtccctggcgaccattcaagttatttggtaaatcaattaccttac
atgaatggttactgttacttgaaattgattcgacgaacttgtcgattcaatgcggttgtt
actcttggaccctggcccctggcaacagacttctttgactatattatacataggaacttg
aacaaagatcttggtctattcaaatgtaatttggagaataccataaacggttccttttgt
catattgtcgaagccgaccctggaagtcagaactgcatctttcctttaccccaggactgt
cgaattgggggttcaataagtgaagttgtgaaaacgttgggtcccgacaaagagatgatt
gaacgtgacgctgtcaccgaaatcaaaaaggaaattgcgattgtacgtaagtataatccc
taccaccattcttcaaagcaacagagcgctttggagtcttatggcattggctctgatccg
tacgctgtgcgttctcatactcatgctgctgagaaagcgatcgaaaacaaattgttagac
atcgttggtatgaacctgaggagacgtagcgtgattacaatgctgtggcaaaagaggaat
aaagctcacctcatgggtagaagtaattgtaaagacgtttacgtcaatactattatggaa
gccaaagatcttgtgcgctatgatcaattctctttcggtctgccaagtgttgccacttca
acggcatttatcggcgatgcactacatcacatgacaccagaatcggtttttgatctcttc
gaaagatcgccaaacctaatggtacttcatgcgacaatagtgataccaccggaaacgttg
ttaaagtgtaggtcatcaaaccctgaactttacagtttaaggtattacgatgataaattt
gtgtacattcctgaaggacacgcgggaggttcttatgtacatgaagttaaaaactctaat
tggcttgctatctctcatatccagagagggggcaaattcctgactgtgaaaagattggag
actctcgccgcccatcactactttgtgatagtgaagggaaaggttgagaccgattccatt
cgagtctttcagtcaccaagccaagtagaattgctggacattttcgctgaccggcaatcc
aatgtaagatgctctctggatcatgcctttgctattaaaatggaaaggtatgtccattct
ttaaagagattggaattagctgacgtcacggccaagacaagacaattgctgagtagcgaa
gaacttcttcaatactcaccaactgacttggtcaagatcgacaactacttttattttcta
gcacacacttccagattcaactcgtcggaggagttaattggaagtgggttcttcgagtcg
ctcgtttcaccacttaaacaatggtttagtgaaatatgtgagaaattccttggaaagtca
aattttcacaagacactcgaagcgttagaatggaaggtcattaattacgatgtcaagact
gtaatttatgatatgagcaaaccttgggaaaaacttcattggaaatcggaaaataatctg
ctttcctttgatcttgacagtaatgataatccaacttcactggtagacaatactgactgt
gaagcttcttattctgaatcaaccaaatttgattatgagttagtgcaagtggaagatgac
tttatagacattcgaattccaggcattgacatcccaatatatgattcagaatatcttgct
tcagaggagcctgtcgaggtagaagaatctccaattcctgaagtacttccggaaattgaa
gataacctttccgacagtatgtcaatcgatggttggatgagtcaaagtctcaaaactttc
ctgcctgagcatgatgacaaagtcctctctatcttagaaaaatttggtgtctcaaaatat
ggtcaagttgttggtaagaatctgatcttaccaattacagactttaagagtgtccaattt
gaaaagataggtcaagatgaattcactgaatctttacaggatcgtggatttggatttgtc
tcgtacacgccagacgccgagagagtagctgtcgcagcgacagacttagagcatggtcaa
ggagtgctaatcacttctgacgaagccggtgagcttttcaagaaagccatgccaatgtct
gtctacacgtgcgttattcttggtgctggtggtgcggggaaaacaacatttgtcgagaaa
tttgttaaggacaatccgaaatctttcactgtcgtcactcccctctctgtgctaaagaag
gagtggcaacggaaaggtgccaagaacgtctttacttatgaaacggctctaaagcgtagt
cttaagaaacccgctaatgagtacgtcatcctcgatgatttcacccgttttcccgccgga
tggattgagttgtacatgagcttaaacactaagtctaagtatattgtgataggagatagt
cgacaagcggatagtcattcaatgagtggagcttttgctaatgcattagtcccagccatt
gatctattcgccccgttgagcccattttatttaaattggacttggcgcatgactcgacct
gttgctaatgctctaggccatgtgtcctggaagttaccggaatcaggaaaaccaattctc
agtgtttcgtctgaggtgcctaaagactgtgtagtcttggcaccgtcgacaacattgaaa
gttggagttgaaacagtaaatgataaagcatttacatacacgagtgctcaaggtgctact
tttgataaagttgctatcttgattgatgataatatcactcgtgtgtgtggcgataaagca
gtttacactgccttaagtcgttcaaaaggcgaaattgtttttgtttctactgtcactggg
ccggatactttcgaaaaagtgaagtgtactccttttttgagaacttttgtggaactggtt
cgtgagtatgaactaaatcagcctaaagttagagagcctgaggaagactttgttgatgac
gtgacaccggtcaccagtcagcctaaagtttccgaagaatttttaattgaggaattgaat
aaaaattctgtcgaaaagtttgacagagaaatattcagagctgatttgggacacactgac
gcagtcaaggaaataggtagagttacagaacaaataccccgtcaacagaggagtgatgag
gctctaaatctagtcacactggataagagagtccatcatgcaactgttgaagagaatttg
gacgaactcgctcggaaaaaggccttaggaaatattctttggactaattttaaagagcaa
tactattccggactcgaatcagtaatggttgaccaagatctcttggtctcatgccgggcc
gaaattactaagacgtatcttagtaagactgaggcgcttcttaagggaggacaattgaga
caatcaccagactttgataagtttaagattgcagatttccttaagacacaatgggtgaga
aagactgagaagtatggattaccgataaaggcaggtcagactgttacctcatttatgcag
gaaacagtcatggcaactggtactttaagtagatatatgcgaaggatgtttgacaaatta
tgtacaaaccctaacgtgtatctgcatcgggaaaagactgaacaggatttctcaacttgg
gttaagaatggttggaacttcagtggtcacgcaactattaacgactgcgaagcttttgat
gcttcacaagatggtgcttttgttgaatttgagcgtttacatgctgaattccttggagta
ccacgagagttaatagacttttacgttgacacaaagataaaatcatatatttggagaggg
acaatttcagtcatgagactatcgggtgaaggccccacttatgactttaatacttgggct
aacatggctttcatggctaccaagtattccattcctagtgtagcaatgactgcttactcc
ggtgatgattttgcttgtgaccaagtgctgtcagttaaacctgcttttaaagagcttgaa
tgcagattcaaacttaaggaaaagaggtttctgaaatcacagggtcgtggttcctatgca
gatttttgcgggatgataataacgccaaatggtgtcattaaaaacccaaggaaattatat
ttgagtctaaagagtcatgatgaaattggcactattgataaggcaatagtcaattattat
aatgaccttcgaactttaatttctttgggtgacaatatcttctccgcgcttgacgcgacc
gagactgagttttttgccggttgtctgaacgttgttcatgattacatactaaggggtagt
aattatgaaggccatcagaatttgactctattcaagaaaccacgaaccattaagtggaga
gtggaacgagatgaaactagggactgtttaatccatatgattattcaagaccgaaaattc
atccgcaatctattggaaggagtcgaacagacatgtgacaataaacccaattctaacctc
attttccgtggaatgacaaatggttatcaaaaacgagccaagtttaaccaattgttaaac
cgccaagatgagtatttagacaaggtcttgcacaaatctgcaggtcaaaatgcccttcgt
cgcttaactgcaacattagacgacacccaagattcgactgtcgctgaacaatcagcagtg
tga

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (43)   
   RefGene (41)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
Taxonomy (1)   
   TAX (1)   
All databases (53)   

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