KEGG   Virgibacillus halodenitrificans: BME96_04105
Entry
BME96_04105       CDS       T04548                                 
Name
(GenBank) RNA polymerase sigma-I factor
  KO
K03093  RNA polymerase sigma-I factor
Organism
vhl  Virgibacillus halodenitrificans
Brite
KEGG Orthology (KO) [BR:vhl00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vhl03021]
    BME96_04105
Transcription machinery [BR:vhl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BME96_04105
SSDB
Motif
Pfam: Sigma70_r2 HTH_16 Histone_HNS
Other DBs
NCBI-ProteinID: APC50175
Position
808944..809669
AA seq 241 aa
MSKSLKDIPLEKMIASAQQGDELIQNYLLKTYQPFIAKCVSEVCKRYIDPKKDDEFSIGL
SAFNEAILSYSPDKGSSFLSFANLVVKRKVIDYIRYVQKRPLGISLDETYDAELMENPIE
IVAVKRNFQMEQDAWRRKEEIMDFKEKLKEYKLTLLELTESSPKHKDARDSAVRTARILF
EDEKLHSYVLDKKKLPIKDLIKRVNVSKKTLERNRKFILAIFVVLSNDYVYLQDYLKGVG
Q
NT seq 726 nt   +upstreamnt  +downstreamnt
atgagtaagtcattaaaagacattcctcttgaaaaaatgatcgcctcagctcaacaaggg
gacgagctaatacaaaattatcttttaaagacatatcaaccatttatcgctaagtgtgtt
tctgaagtatgcaaacgttatatcgatccaaaaaaagatgacgaattcagtatcgggctt
tcagcatttaatgaagctattttatcctattctcctgacaaagggagttcttttttatct
ttcgcaaacttggtagtgaaaaggaaggttattgactatattcgttatgttcaaaaacgc
ccactggggatttcattggatgaaacatatgatgcagaattaatggaaaatccaattgaa
atagtagctgtaaaacgaaatttccaaatggaacaggatgcttggcgacgtaaggaagaa
ataatggattttaaggagaaattgaaggaatataaattgactcttttagaattaactgaa
tcctcgccaaaacataaggatgcgcgtgactcagcggttcgtacagctcgtatcttattc
gaagatgagaaattacacagttatgtattggataaaaagaaattgcccattaaagatctg
atcaaacgtgtcaacgtgagtaaaaaaacattggaaaggaacagaaaattcattttagcg
atatttgtcgtcctcagtaatgattatgtatatcttcaggattatctaaagggggtgggt
cagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (9)   

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