KEGG   Vibrio harveyi: AL538_09215
Entry
AL538_09215       CDS       T04380                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
vhr  Vibrio harveyi
Pathway
vhr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vhr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AL538_09215 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vhr03021]
    AL538_09215 (rho)
   03019 Messenger RNA biogenesis [BR:vhr03019]
    AL538_09215 (rho)
Transcription machinery [BR:vhr03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     AL538_09215 (rho)
Messenger RNA biogenesis [BR:vhr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AL538_09215 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT AAA_25 OB_RNB AAA_22 AAA FtsK_SpoIIIE Spore_III_AA
Other DBs
NCBI-ProteinID: AMF97871
UniProt: A0A1E3E350
Position
1:complement(1939365..1940624)
AA seq 419 aa
MNLTELKNRPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVN
DDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNMEIHLNRKIAEKRVFPAIDF
NRSGTRREELLTKNEELQKMWILRKIVHPMGEIDAMEFLIDKLAMTKTNDEFFDAMRRQ
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaatcttactgaactgaagaacagacctgtgtctgaccttgtaaagcttggcgaaagc
ctgggtcttgagaacctagctcgtctaagaaaacaagacatcatcttcgcaattcttaaa
gcgcacgcgaaaggcggcgaagacatctttggcgatggggttctggagattctgcaagac
ggctttggtttcctacgtagcgcggacagctcataccttgctggtccagacgatatctac
gtttcaccaagtcagattcgtcgcttcaacctacgtactggtgactcaattgctggtaaa
attcgcccaccaaaagacggtgagcgctactttgccctgctaaaagtcaacacagttaac
gacgacaaaccagacaacgctcgtaacaagatcctattcgagaacttaacgccgctacac
gctaacgagcgtatggtaatggagcgcggtaacggttctacagaagacatcacagcacgt
gttttagacttggcatcgccaattggtaaaggtcaacgtggtctgattgttgctccgcct
aaagcgggtaagacaatgcttctgcaaaacattgctcaaagcatcgcatacaaccaccca
gagtgtgagttgatggtacttcttatcgacgaacgtccagaagaagtaacagagatgcag
cgtctagttaaaggtgaagtagtagcgtcaacattcgatgagccagcttctcgccacgta
caagtagcggaaatggtaatcgagaaagcaaaacgtcttgttgaacacaagaaagacgtg
gttatcctgcttgactctatcactcgtctagctcgtgcatacaacaccgtagtgccttca
tcaggtaaagtactaactggtggtgtggatgcaaacgcactacaccgtcctaagcgtttc
ttcggtgcagcacgtaacgtagaagaaggtggcagcctaactatccttgctactgctcta
gttgatactggttctaagatggacgaagttatctacgaagagttcaagggtacaggtaac
atggaaatccacttgaaccgtaagatcgcagagaagcgtgtattcccagcgattgacttc
aaccgcagtggcacacgtcgtgaagagcttctaactaagaacgaagagcttcagaagatg
tggattctacgtaagattgttcacccaatgggcgaaatcgatgcaatggaattcctaatc
gacaagctagcgatgacgaagaccaacgacgaattctttgatgcaatgcgtcgtcagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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