KEGG   Vibrio harveyi: AL538_23390
Entry
AL538_23390       CDS       T04380                                 
Symbol
icmF
Name
(GenBank) type VI secretion system membrane subunit TssM
  KO
K11891  type VI secretion system protein ImpL
Organism
vhr  Vibrio harveyi
Pathway
vhr03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vhr00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    AL538_23390 (icmF)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vhr02044]
    AL538_23390 (icmF)
Secretion system [BR:vhr02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   AL538_23390 (icmF)
SSDB
Motif
Pfam: IcmF-related_N IcmF-related IcmF_C IcmF_helical DUF4885 UbiA DUF2070
Other DBs
NCBI-ProteinID: AMG00625
UniProt: A0A454BES1
Position
2:complement(1411610..1414999)
AA seq 1129 aa
MFKQKILRNPIVVSTIVALILAVIFAAVYLFLLEDADKLYLWIGLGVIAAFYLIFQFSLW
LKKKNNSKAQRLETEEEALSMVIRPLLSNAGKKPIYLMIGNKGSGRRQFLFNSSAIKPMD
RSRTAKNDFFEWYESDSAVYVKPDQRLVFQEVSSSDASLWNTFVDEVIRHRPRKPFSGCL
FFTDFEFMIVSESEQKDYTITALLQRLSSISEKTSSALPVYMMMSKLDKLDGFKEYVHFS
SLKTRVEFLSIPLKEAKGVITEYYRDGFRNLVKVLETNALDASANSADIDEKQAILAFPK
QFELCQAEISYVLERLCDANSGVYSLDIREIFFCSSLQGGRKYNLLAKSCSNYFNLPIIA
SEHTQLTETPYFSRFLIDSQILPESDFAGENKTYLRLIQRQSHLAMLASIILLAGGGYFF
VTTLDSNLRVINQLLGIDDKGQVEQEASFNQLLVSATRAIQPSYSAWLEGSRALDEEVLP
LNISRLDQTTRLAYEALLKEVSQQLMPVVEKGYRLELTHNQHDITATLPLLKGYLMLNDP
SKRDIQFLRRQTLQTLNDLSDKPDVVNQAMRYLDAYFRTQFAPVDINMDIVRATRRSLLA
HSNVDLVYAGILNQADAIDLGTLDLQRAVGFEFNNVFNEPLDDNRLVIDKVYTSTGFSTF
YRPRVDLMSQQVISDNWVLGLSNHVIPTKQEQEAFKTQVRKKYTDDYINYWRNALSELKV
HHYNNVGDLTNAIDLISGPSSPMTTVLKQVYANTQFSPVGEKNALIAKVNPKLAEAADSA
SEAVEEVVKPDYLLMKRVEQAFHLLNQLQVSETPNSPTPWDETIAALSRVRTYMKDIADA
PDPQMAALAAAQHRMNSTEADPLIKLKQIAQKSPEPVRSWLLDVVQQSWSVMIKESAKGI
QTQWYSEIYTKFKELGLGKYPFDLNATEEISIEDFELLFASGGLLDTFIQKNFAPFYDTN
LWTPKQVDGETMPLSPALLVQLRNYNVIRDTLINKSTNRVYIPFSAKVLDLDSSAIRASL
KISDTDINYYHGPSRIREMEWPPQNGDFNIRITIQDVTDEGKQHVLNKSGQWAIYRLLGD
STLTNTHNGSFVSDIKVSGRDLSLRITPLTQKNPFTLAELYNFTLPESI
NT seq 3390 nt   +upstreamnt  +downstreamnt
atgttcaaacaaaaaatactaagaaacccgatcgtggtttctaccatagtggctttaatc
ttggctgtaatatttgcagcagtatatttattcttactcgaagatgcagataagctttat
ctatggattggtctaggagtcattgctgctttttatcttatattccagttttcactgtgg
cttaagaaaaagaacaactcaaaagcacaacgtttagaaaccgaagaagaggcgctttca
atggtgattcgccctcttctttctaacgctggaaaaaagccaatttatctaatgattggt
aataaaggttctggacgacgccaatttttgtttaattccagtgcgattaaaccgatggac
cgttctcgtacggcaaaaaatgacttctttgaatggtatgagtctgacagtgccgtttat
gtcaaaccagaccaacgcctcgtatttcaagaggtatccagtagcgacgcatcactgtgg
aatacattcgttgatgaagttattcgtcatcgcccaagaaaaccattttctggatgtcta
ttctttacagactttgaattcatgatcgtttcagaatcagaacaaaaagactacacgatt
actgccctgttgcagagactaagctctatcagcgagaaaacgtcttcagcactgcctgtt
tacatgatgatgtctaagcttgataagctagatggtttcaaagaatacgttcatttcagc
tctcttaagactcgagtagagtttctttccattcctttaaaagaagcgaaaggcgtaatc
actgagtactatcgtgacggattccgtaacttagtgaaagtgctggaaacaaatgcgtta
gacgcatccgcaaactcagcggatatcgacgaaaaacaagccattcttgctttcccaaaa
cagtttgaactttgccaagcagaaattagttatgtacttgaacgcctttgtgatgcaaac
agtggtgtttactctctcgatattcgtgagatcttcttctgttctagcttgcaaggcggt
cgtaagtacaacttgttggcgaaaagctgcagcaattacttcaatttgccgatcattgct
tctgagcacacacaacttacagaaaccccttacttctctcgtttcttgattgattctcag
atcttaccggagagcgactttgcgggagaaaacaaaacgtatctgcgcttgattcagcgc
caaagccatttagctatgctggcatcaattattctattagctggcggcggctatttcttt
gtcacaacactagatagcaacttgcgtgtgattaaccaactgctcggcattgacgacaaa
gggcaggtagaacaagaagcaagctttaatcagctattagtgagtgcaactcgtgcaatt
caaccttcatacagcgcatggttagaaggttctcgtgcgcttgatgaagaagtactacct
ttgaacatcagccgcttggaccaaacgacaagactggcctacgaagcactgctcaaagaa
gtctcacaacagctcatgccagttgttgagaaaggctaccgtctggaactgactcataat
cagcacgacattactgcgacactgcctttactcaaaggctacttaatgctgaatgatcca
tccaagcgcgatattcaattcctacgtcgtcagacgctacaaacattaaacgatttgagt
gacaaaccagatgttgtgaatcaggcaatgcgttacttggatgcttatttccgtacccag
tttgcccctgtcgacatcaacatggacattgttcgcgctactcgacgctcattgcttgct
cactctaacgtagatcttgtttatgctggtatattgaaccaagcagatgccatcgacctt
ggtacgctcgatcttcaacgcgcggttggcttcgaattcaataacgttttcaacgaacca
ctcgacgataaccgcttggtcatcgataaggtttacacttcaacaggctttagtaccttc
tatcgccctcgtgtggatttgatgtcacaacaagtgatcagtgacaactgggttcttggt
ttatctaaccacgtgatccctacgaaacaagaacaagaagcgttcaaaactcaagtccgt
aagaagtacaccgatgactacatcaactactggcgtaatgcactgagtgaactgaaagtc
caccattacaacaatgtcggtgatctaaccaatgctatcgacttaatttcaggtccatct
tcgccgatgaccacggtgttaaagcaagtctacgccaacactcagttctcccctgtcggc
gagaagaatgcattgattgccaaagtaaacccgaaactggcagaagcagcagattcggca
tcagaagcagtagaagaagtagtgaagcctgactacttgttaatgaagcgtgtcgaacaa
gccttccacctgttgaaccaacttcaagtcagtgaaacacctaactcccctactccgtgg
gatgaaacgattgcagcattaagccgtgttcgtacttatatgaaagacattgctgatgcg
ccagacccgcaaatggccgcacttgctgcagcccagcaccgaatgaacagcactgaagcc
gatccattgattaaacttaagcagattgctcagaaatcgccagagccagtgcgcagttgg
ttacttgatgtcgttcagcaaagctggtcagtgatgatcaaagaatcagcaaaaggcatt
caaacccaatggtacagcgagatttacaccaagtttaaagagctagggcttggtaaatac
ccatttgatctgaacgcgacagaagagatctcaattgaagacttcgagctgttgttcgca
tcaggtggtttattagacacgtttattcagaagaacttcgcaccgttttacgatactaac
ttgtggacaccaaaacaggtagatggcgaaaccatgcctctttctcctgccctattggtg
caattgcgcaactacaacgttatccgcgatacgttaatcaataagagcacaaaccgagtt
tacatcccgttcagtgcgaaagtactagaccttgattcgagtgctatcagagccagtctg
aaaatttcagacactgatatcaactactatcatggtccgagccgaattcgtgaaatggag
tggccgccgcagaacggtgacttcaatataagaatcacgatccaagatgtgacagacgaa
ggcaaacaacacgttctaaataagagtggtcagtgggcgatatacagattgctaggtgat
tcgaccctgacaaacactcataacggtagcttcgtcagtgacataaaagtgtcaggaagg
gatttgagccttcgtatcacccctttgacacagaaaaacccattcactctagctgagctg
tataactttacactcccagagtcgatttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system