KEGG   Vitreoscilla sp. C1: ADP71_33130
Entry
ADP71_33130       CDS       T05336                                 
Name
(GenBank) subunit beta of DNA-directed RNA polymerase
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
vit  Vitreoscilla sp. C1
Pathway
vit03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vit00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    ADP71_33130
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vit03021]
    ADP71_33130
   03400 DNA repair and recombination proteins [BR:vit03400]
    ADP71_33130
Enzymes [BR:vit01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     ADP71_33130
Transcription machinery [BR:vit03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     ADP71_33130
DNA repair and recombination proteins [BR:vit03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      ADP71_33130
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: AUZ06461
UniProt: A0A2L0PQT4
Position
2563105..2567277
AA seq 1390 aa
MSYSFTEKKRIRKSFAKRENVLDFPFLLATQLDSYASFLQLNTPFDQRKEDGLQAAFTSI
FPIISHNTHARLEFVHYILGEPAFDIQECQMRGITYAAPLRARIRLVIMDREASKPTVKE
VRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARI
IPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYDAEAILNMFYDKDVFHLSEDG
IEQELVLSRLKGEVAKIDVMDKDGNLIVAKGKRFTAKSVRDLSNAGINRLTVDFDSLIGK
VLAKDVITPLTGEVLASANEELTEEVLAQLQIHEIKRIETLFINELDQGGYIANTLRVDE
VETRLQARVAIYRMMRPGEPPTEDAVEQLFNRLFFSGDSYDLSRVGRMKFNTRTYEHKLD
EKSPNWYRSMIEELSALTDGKNFVLTNEDIIISIATLVELRNGHGEVDDIDHLGNRRVRS
VGELAENQFRSGLARVERAVKERLNQAESDNLMPHDLINAKPVSAAIKEFFGSSQLSQFM
DQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL
SVYARTNEYGFLETPYRRVIDGKVTDQIDYLSAIEEGRYVIAQANAELNAEGALIDDLVT
CREKGDTILATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRA
DKPLVGTGIERSVAVDSATAVVARRGGVVESVDASRVVIRVHDEEAIAGEVGVDIYNLVK
YTRSNQSTNINQRPVVSKGDILARGDVVADGASTDLGELALGQNMTIAFMPWNGYNYEDS
ILISERVVAEDRYTTIHIEELNVVARDTKLGAEEITRDIPNLSERMQNRLDDAGIVYIGA
EVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQVFT
REGIERDKRAQSIIDSELKPYRKDLNDQIRIFNNDAFDRIERMIVGQEANGGPMRLVKGT
KITKEYLLVIENKHEWFDIRLADENLAKQLELTKHSLAQKYEEADAMYEVKKKKLTQGDE
LQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRTVDIVLNPL
GVPSRMNIGQILEVHLGWAAKGIGERVNKMLVEQREVAELRAFFDKLYNTSGKKEQLDEF
TDAEILNLAKHLRRGMTFASPVFDGADEAEIKEMLELAYPSEDPDMQKLGFNATKTQVTL
YDGRTGEAFDRHVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE
MEVWALEAYGAAYTLQEMLTVKSDDVVGRTKMYENIVKGEHKIDAGMPESFNVLVKEIRS
LGLDIDLERY
NT seq 4173 nt   +upstreamnt  +downstreamnt
atgagttactcattcactgagaaaaaacgcatccgaaaaagctttgccaaacgtgaaaat
gttttagattttccgtttttgcttgctactcaattggattcttacgcatcatttttgcag
ttgaatacgccatttgaccaacgtaaagaagatggtttacaggccgccttcacgtctatt
ttcccaattatcagccacaatacacatgcgcgcttagagtttgtacattacatcttgggc
gagcctgcatttgatattcaagaatgtcaaatgcgtggtattacgtatgcagcacctttg
cgtgcacgcattcgtttggtgattatggatcgtgaagcttctaaaccaacggttaaagaa
gttcgtgaaaatgaagtttacatgggtgaaatcccattgatgacaccaagtggttcattt
gtcattaatggtactgagcgcgttatcgtgtctcagttacaccgttctcctggcgtgttc
tttgaacatgaccgtggtaaaacccattcgtctggtaaattgttgttctcagctcgcatc
attccttaccgtggttcatggttggattttgagtttgatccaaaagatttgttgtatttc
cgtattgaccgtcgccgtaaaatgccagtgaccatcttgttgaaagcattgggttacgat
gctgaagcgattttgaacatgttctacgataaagacgtgtttcatttgagcgaagatggc
attgagcaagagttggtattgagccgcctgaaaggcgaagttgccaaaatcgatgtcatg
gacaaagatggcaatttaatcgttgccaaaggcaaacgctttactgcgaaatctgtacgc
gatttaagcaatgctggtatcaatcgtttgacggtggattttgacagcttgattggcaaa
gtattggccaaagatgtcatcacaccattgactggtgaagttttggccagtgcgaatgag
gaattgaccgaagaagttttggctcaattgcaaattcacgaaatcaaacgaattgaaact
ttgttcatcaacgagttagatcaaggtggttacattgctaataccttgcgtgttgatgaa
gtagaaactcgcttgcaagcacgtgtggctatttaccgcatgatgcgtcctggtgagcca
cctaccgaagatgctgttgaacaattgttcaatcgcttgttcttcagtggcgacagctat
gatttgtcacgcgtgggtcgtatgaagttcaacacccgtacttacgaacacaaattggat
gaaaaatctccaaattggtaccgtagtatgattgaagaattgtctgcattgactgatggc
aaaaattttgtattgaccaatgaagacatcatcatttcgattgcgactttggttgaattg
cgcaatggtcatggcgaagtggacgatattgaccacttgggtaaccgtcgtgttcgttca
gtaggtgaattggctgaaaaccaattccgttcaggcttagcgcgtgttgagcgtgctgta
aaagagcgtttgaaccaagctgaatcagacaacttgatgccacacgacttgatcaatgcc
aaacctgtttctgcggcaatcaaagaattttttggttctagccaattgtctcagttcatg
gaccaaaccaacccattgtctgaagtgacacacaaacgtcgtgtttctgctttgggcccc
ggcggtttgacacgtgaacgtgcaggttttgaagtacgtgacgtacatccaacacattac
ggccgtgtgtgtccgattgaaacaccagagggtccaaacattggtttgatcaactctttg
tctgtttatgctcgtaccaatgaatatggcttcttggaaacaccttaccgccgtgttatt
gatggcaaagtgaccgatcaaatcgattacttgtctgctattgaagaaggtcgctatgtg
attgcacaggcgaatgctgaattgaatgcagaaggcgctttgattgatgatttggtgact
tgtcgtgaaaaaggtgacaccattttggctacgccagaccgtgttcaatacatggacgtg
gcgacaggtcaggtggtatcggtagctgcttcattgattccattcttggagcatgatgac
gccaaccgtgcattgatgggtgccaacatgcaacgtcaagcggttccttgtttgcgtgcg
gataaaccgttggtaggtactggtattgagcgctctgtagcggtggattctgcaactgcg
gttgtggcacgtcgtggcggtgtggttgagtctgtggacgcaagccgtgtcgtgattcgt
gtacatgacgaagaagcgattgctggtgaagtgggtgtggatatctacaacttggtgaaa
tacacccgttctaaccaatcaaccaatatcaaccaacgtcctgtagtgagcaaaggtgat
atcttggctcgtggtgacgtggtcgctgacggtgcatcgactgacttgggtgaattggct
ttgggtcaaaacatgaccatcgccttcatgccttggaatggttacaactacgaagactcg
attttgatttctgagcgtgttgtggcggaagaccgttacaccaccattcatattgaagaa
ttgaacgttgtagcgcgtgataccaaattgggtgctgaagaaatcactcgcgacattccg
aacttgtctgaacgcatgcaaaaccgtttggatgatgcaggtattgtgtacatcggtgct
gaagtggaagctggtgacgttttggtgggtaaagtaacccctaaaggcgaaacccagtta
acaccagaagaaaaattgttgcgtgcgattttcggtgaaaaagcctctgatgttaaagac
acgtcattgcgtatgccaacaggtatgagcggtacggtgattgacgttcaagtattcact
cgtgaaggcattgagcgtgacaaacgtgcacaatcgattatcgattctgagttgaaacct
taccgtaaagacttgaacgaccaaattcgtattttcaataacgatgcttttgatcgtatt
gaacgcatgattgtgggtcaagaagccaatggcggtccaatgcgtttggtgaaaggtacc
aaaattaccaaagaatatttgttggtgattgagaacaaacatgaatggttcgatatccgt
ttggctgatgaaaacttggcgaaacaattggaattgaccaaacacagtttggcgcagaag
tatgaagaagccgatgccatgtatgaagtcaaaaagaaaaaattgactcaaggcgacgaa
ttgcaacctggcgtacaaaaaatggtgaaagtattcatcgccatcaaacgtcgtttgcaa
gcgggtgacaaaatggctggtcgtcacggtaacaaaggtgtggtatctcgcatcttgcct
gtggaagacatgccatacatggccgacggtcgtacggtggacatcgtattgaacccattg
ggcgtaccatcgcgtatgaacattggtcagattttggaagtgcatttgggttgggctgcc
aaaggtattggtgagcgtgtgaacaagatgttggtagaacaacgcgaagtggccgaattg
cgcgccttcttcgataagttgtacaacaccagcggcaagaaagagcaattggatgaattc
accgatgctgaaatcttgaacttggcaaaacacttgcgtcgcggtatgacgtttgcttct
cctgtatttgatggtgctgatgaagctgaaatcaaagagatgttggaattggcttatcca
agcgaagatcctgatatgcaaaaattgggcttcaatgcaaccaaaactcaagtgactttg
tacgatggtcgtacgggtgaagcatttgaccgtcatgtaaccgttggtgtgatgcattac
ttgaaattgcatcacttggttgacgaaaaaatgcatgctcgttctactggtccttacagc
ttggtgacacaacaaccattgggcggtaaagcacaattcggtggtcagcgtttcggtgag
atggaggtttgggcattggaagcttacggtgctgcttataccttgcaagaaatgttgact
gtgaagtcagatgacgtggtgggtcgtacgaagatgtatgaaaacatcgttaaaggcgaa
cacaaaattgatgcaggcatgcctgagtcattcaatgtgttggttaaagagatccgctca
ttgggcttggacatcgatttagagcgttactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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