KEGG   Micromonospora maris: VAB18032_12010
Entry
VAB18032_12010    CDS       T01471                                 
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
vma  Micromonospora maris
Pathway
vma03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vma00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VAB18032_12010
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vma03019]
    VAB18032_12010
   03016 Transfer RNA biogenesis [BR:vma03016]
    VAB18032_12010
Enzymes [BR:vma01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     VAB18032_12010
Messenger RNA biogenesis [BR:vma03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     VAB18032_12010
Transfer RNA biogenesis [BR:vma03016]
 Prokaryotic type
  tRNA degradation factors
   VAB18032_12010
SSDB
Motif
Pfam: RNase_PH PNPase KH_1 S1 RNase_PH_C KhpA-B_KH KH_2
Other DBs
NCBI-ProteinID: AEB43516
UniProt: F4FBQ4
Position
1615925..1618294
AA seq 789 aa
MTETKLGTESRTAVIDNGSFGTREITFSTGRLARQAAGSVIAQLGETVVLSATTAGKQPK
EQFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEV
QVVETILALDPQHPYDVVAINAASMSTKLSGLPFSGPIGATRMAHVDGQWVAFPTHEELS
RATFDMVVAGRALADGDVAIMMVEAEATEHTVKLVADGAPAPTEEVVASGLEAAKPAIRE
LCRAQSELAEVAAKPVAEFPVFLDYSDDAYDAVAQFARADVAEALQIAGKADREEALDAI
KSRLVEELGPRFEGREKELSAAFRSLTKSEVRNRVLREQVRIDGRGPRDIRPLNAEVGVL
PRVHGSALFERGETQILGVTTLNMLRMEQALDTLSPEKSKRYMHNYNFPPYSTGETGRVG
SPKRREIGHGALAERALIPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAG
VPLKAPVAGIAMGLISDEVDGKTQYVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTK
LDGIPSDVLAAALQQAHEARQTILDVMQRAIEAPAEMSDYAPRVTTVKIPVDKIGMVIGP
KGQTINAIQDETGAEISIEDDGTIYVGATNGPSAQAAVERINAIANPTMPKAGDRFLGTV
VKTAPFGAFISLLPGRDGLLHISKVGDGKRVEKVEDFLNVGDRVEVEIADIDQRGKIYLD
KVRPEGAEAPAPAEAEGERPASRGDRGDRGPRDRGDRERGGDRGGRGPERGEGGEGGGDS
RPRRRTRHS
NT seq 2370 nt   +upstreamnt  +downstreamnt
atgaccgagaccaaactcggcaccgaatcccgcaccgccgtgatcgacaacgggtccttc
ggcacccgcgagatcacgttctccaccggtcggctggcccgacaggccgccggctccgtc
atcgcccagctgggcgagacggtcgtcctctccgccaccaccgccggcaagcagccgaag
gagcagttcgacttcttcccgctgaccgtcgacgtcgaggagcggatgtacgccgcgggt
cgcatccccggctcgttcttccgtcgcgagggtcgtcccagcgaggacgccatcctcacc
tgccgcctgatcgaccggccgctgcgcccgtcgttcgtcaagggcctgcgcaacgaggtc
caggtggtcgagacgatcctcgcgctcgacccgcagcacccgtacgacgtggtggcgatc
aacgccgcctcgatgtcgaccaagctgtccggcctgccgttctccggcccgatcggggcg
acccggatggcgcacgtcgacggccagtgggtcgccttcccgacccacgaggagctgagc
cgggccaccttcgacatggtggtggccggtcgggccctggccgacggcgacgtcgcgatc
atgatggtcgaggccgaggccaccgagcacaccgtcaagctggtcgccgacggtgccccg
gcccccaccgaggaggtcgtggccagcggactggaggccgccaagccggccatccgtgag
ctgtgccgggcgcagagcgagctggccgaggtggccgccaagccggtcgccgagttcccg
gtgttcctggactactccgacgacgcgtacgacgcggtcgcccagttcgctcgcgccgac
gtcgccgaggccctccagatcgccggcaaggcggaccgcgaggaagccctggacgcgatc
aagtcccgcctggtggaggagctcggcccgcgcttcgagggtcgggagaaggagctgtcg
gctgccttccgctcgctgaccaagtccgaggtgcgcaaccgggtactgcgtgagcaggtc
cgcatcgacgggcgtggcccgcgcgacatccggccgctgaacgccgaggtcggcgtgctg
ccccgggtgcacggctcggcgctgttcgagcgcggcgagacgcagatcctcggcgtcacc
acgctcaacatgctgcgcatggagcaggcgctggacaccctctccccggagaagtccaag
cgctacatgcacaactacaacttcccgccgtactcgaccggtgagaccggccgggtcggc
tcgccgaagcgtcgcgagatcggccacggcgcgctcgcggagcgggcgctgatcccggtg
ctgccctcgcgcgaggagttcccgtacgccatccgccaggtctccgaggcgctcggctcc
aacggctccacctcgatgggctcggtctgcgcctcgacgctgggtctgctcagcgccggt
gtgccgctgaaggccccggtggccggcatcgccatgggcctcatctccgacgaggtcgac
ggcaagacccagtacgtcacgctcaccgacatcctcggtgccgaggacgccttcggtgac
atggacttcaaggtcgccggcacccgggacttcgtcaccgcgttgcagctcgacaccaag
ctcgacggcatcccgtccgacgtgctggccgccgcgctccagcaggcccacgaggcccgg
cagaccatcctcgacgtgatgcagcgggccatcgaggctccggccgagatgtccgactac
gcgccgcgggtcaccacggtgaagatcccggtcgacaagatcggcatggtgatcggcccg
aagggtcagaccatcaacgccatccaggacgagaccggcgccgagatctccatcgaggac
gacggcacgatctacgtcggcgccaccaacggcccgtcggcgcaggcggcggtcgagcgg
atcaacgcgatcgccaacccgaccatgccgaaggccggtgaccggttcctcggcacggtg
gtcaagaccgcaccgttcggcgcgttcatctcgctgctgccgggtcgtgacggcctgctg
cacatctccaaggtgggcgacggcaagcgggtcgagaaggtcgaggacttcctcaacgtc
ggcgaccgggtcgaggtcgagatcgccgacatcgaccagcgcggcaagatctacctggac
aaggtccgtcccgagggcgccgaggcaccggctcccgccgaggcggagggtgagcggccg
gccagccgtggtgaccggggtgaccgtggtccgcgtgaccggggtgaccgggagcgcggc
ggcgaccgtggcggccgcggcccggagcggggcgagggcggcgaaggtggcggcgattcc
cggccgcgccggcgcacccggcacagctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (38)   

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