KEGG   Micromonospora maris: VAB18032_29671
Entry
VAB18032_29671    CDS       T01471                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
vma  Micromonospora maris
Pathway
vma03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vma00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VAB18032_29671
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vma03021]
    VAB18032_29671
   03019 Messenger RNA biogenesis [BR:vma03019]
    VAB18032_29671
Transcription machinery [BR:vma03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     VAB18032_29671
Messenger RNA biogenesis [BR:vma03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     VAB18032_29671
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind Rho_N Spore_III_AA NACHT VWA_2 Exo70_N
Other DBs
NCBI-ProteinID: AEB47005
UniProt: F4F830
Position
complement(5587621..5589663)
AA seq 680 aa
MSDTTDVTSDVSNVAGDATTAAPARRRRSGTGLSAMLLPELQSLAASLGISGTARMRKGE
LISAITERQGSAAGAPRPRAEVAAAAAPAREEVHAEVRETGERPEAGRRAAEQPAASVET
EGRTRTRRTRATAVAEPRAEEAAAETGERSEGRTSRAAERGGERAAERAERTADRSGERA
ERGERAAERGDRAERGDRAERAERGDRAERGERAERGAERGERAERGERTERGDRGERAA
ERGERGDRGERGQRTERDNNTDDDDENGGRRSRRSRFRDRRRGRNERGESGGEGGGREPQ
VGEDDVLVPVAGIVDVLDNYAFVRTTGYLAGPNDVYVSMSQIKKYGLRRGDAITGAVRAA
RDGEQRRDKYNPLVRLDTINGMEPDEAKRRPEFYKLTPLYPQERLRLETEPHILTTRVID
LVMPIGKGQRALIVSPPKAGKTMVLQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSV
KGEVIAATFDRPPQDHTTVAELAIERAKRLVELGHDVVVLLDSVTRLGRSYNLAAPASGR
IMSGGIDSTALYPPKRFLGAARNIENGGSLTILATALVETGSMADTVIFEEFKGTGNAEL
KLDRKIADKRTFPAVDVSASGTRKEEILLAPEELAIVHKLRKVLHSLDSQASLDLLLDRL
KQSRTNIEFLMQIAKSTPGE
NT seq 2043 nt   +upstreamnt  +downstreamnt
ttgagcgacaccaccgacgtgacgtcggatgtttccaacgtcgctggcgatgccaccacc
gctgctcctgcccgccgccggcgcagcggcaccggcttgtcggcgatgctgctgccggag
ctccagagcctggctgcgtcgctcggcatctcggggacggctcgcatgcgcaaaggcgag
ttgatcagcgcgatcaccgagcggcagggcagcgccgcgggcgcccctcgaccacgggcc
gaggtcgcggcggccgctgcgcccgctcgcgaagaggtccacgccgaggtacgcgagacg
ggtgagcggccggaggccgggcgccgcgccgccgagcagccagcggcgagcgtggagacc
gagggccgtacccggacccggcgcacgcgggccaccgccgtggcggaaccgcgtgccgag
gaggccgccgccgagaccggcgagcggagcgagggccggaccagccgcgctgccgagcgt
ggcggtgagcgtgctgcggagcgtgccgagcgtacggccgatcgcagcggagagcgtgcg
gagcgcggtgagcgtgccgccgagcgcggcgatcgtgccgagcgcggtgaccgtgccgag
cgtgcggagcgcggtgaccgtgccgagcgcggtgagcgtgccgagcgtggcgccgagcgc
ggtgagcgtgccgagcgcggtgagcgtacggagcgcggagaccgtggtgagcgtgccgcc
gaacgcggcgagcgcggggaccgtggcgagcgcgggcagcgtaccgagcgggacaacaac
accgacgacgatgacgagaacggcggccggcgcagtcggcgtagtcgcttccgggaccgt
cggcggggccgtaacgagcgcggtgagtccggcggcgagggcggcggccgtgagccgcag
gtcggcgaggacgacgtgctcgtgccggtggccggcatcgtcgacgtgctcgacaactac
gccttcgtccggaccaccggctacctggccggcccgaacgacgtgtacgtgtcgatgtcc
cagatcaagaagtacggcctgcggcgcggtgacgcgatcaccggtgcggtgcgggcagcc
cgggacggcgagcagcgtcgcgacaagtacaaccccctggtccggctggacaccatcaac
gggatggagccggacgaggccaagcggcggccggagttctacaagctcaccccgctctac
ccgcaggagcgactgcggctggagaccgagccgcacatcctgaccacccgggtcatcgac
ctggtcatgccgatcggcaaggggcagcgggcgctcatcgtctcgccgccgaaggccggt
aagaccatggtgctgcaggcgatcgcgaacgcgatcacgcacaacaacccggagtgccac
ctgatggtggtgctggtcgacgagcggcccgaagaggtcaccgacatgcagcgttcggtg
aagggcgaggtcatcgcggccacgttcgaccgtccgccgcaggaccacaccacggtcgcc
gagctggcgatcgagcgggccaagcgcctggtcgagctgggccacgacgtggtcgtactg
ctcgactcggtgacccggctcggtcggtcgtacaacctggcggcgccggccagcggccgg
atcatgtcgggtggtatcgactccaccgcgctgtacccgccgaagcgcttcctcggcgcg
gcccgcaacatcgagaacggcggctcgctgaccatcctcgccaccgcgctggtggagacc
ggttcgatggcggacacggtcatcttcgaggagttcaagggcaccggtaacgcggaactg
aagctggaccggaagatcgccgacaagcggacgttcccggccgtggacgtcagcgcctcc
ggcacccgcaaggaggagatcctgctcgcgccggaggaactggccatcgtgcacaagctc
cgcaaggtgctgcactcgctggactcgcaggcgtcgctcgacctcctgctggaccggctc
aagcagtcccgcacgaacatcgagttcctgatgcagatcgcgaagtcgacgccgggggag
tag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (62)   
   KEGG ORTHOLOGY (1)   
   RefGene (59)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (75)   

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